Detailed information of BRAKERLUSP00000013838.1 in Blastomussa wellsi

Genomic Location: chr2:12364065...12386576
NR annotation: XP_020608205.1, cytosol aminopeptidase-like [Orbicella faveolata]
Species Blastomussa wellsi · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P00727Cytosol aminopeptidase OS=Bos taurus OX=9913 GN=LAP3 PE=1 SV=3
Q68FS4Cytosol aminopeptidase OS=Rattus norvegicus OX=10116 GN=Lap3 PE=1 SV=1
Q9CPY7Cytosol aminopeptidase OS=Mus musculus OX=10090 GN=Lap3 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002945 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00883
all species →
Peptidase_M17Cytosol aminopeptidase family, catalytic domainDomainInterproscan
PF02789
all species →
Peptidase_M17_NCytosol aminopeptidase family, N-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011356
all species →
FamilyPeptidase M17, leucine aminopeptidase/peptidase BInterproscan
IPR043472
all species →
Homologous_superfamilyMacro domain-likeInterproscan
IPR023042
all species →
FamilyPeptidase M17, leucine aminopeptidaseInterproscan
IPR000819
all species →
DomainPeptidase M17, leucyl aminopeptidase, C-terminalInterproscan
IPR008283
all species →
DomainPeptidase M17, leucyl aminopeptidase, N-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11963
all species →
LEUCINE AMINOPEPTIDASE-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005737
all species →
Cellular ComponentcytoplasmInterproscan
GO:0019538
all species →
Biological Processprotein metabolic processInterproscan
GO:0030145
all species →
Molecular Functionmanganese ion bindingInterproscan
GO:0070006
all species →
Molecular Functionmetalloaminopeptidase activityInterproscan
GO:0006508
all species →
Biological ProcessproteolysisInterproscan
GO:0046872
all species →
Molecular Functionmetal ion bindingInterproscan
GO:0008233
all species →
Molecular Functionpeptidase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K11142LAP3; cytosol aminopeptidaseEC:3.4.11.1
EC:3.4.11.5
Peptidases and inhibitorsko01002deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Blastomussa wellsi tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Blastomussa wellsi, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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