Genomic Location: not available for this species
NR annotation: XP_020608611.1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related-like [Orbicella faveolata]
Species abbreviation BWELL · all data for this species · gene families
| CDS |
| BRAKERLUST00000014471 |
| Transcript |
| BRAKERLUST00000014471 |
| Protein |
| BRAKERLUSP00000014471.1 |
| UniProt accession | Description |
|---|---|
| Q9DC33 | High mobility group protein 20A OS=Mus musculus OX=10090 GN=Hmg20a PE=1 SV=1 |
| Q9NP66 | High mobility group protein 20A OS=Homo sapiens OX=9606 GN=HMG20A PE=1 SV=1 |
| Q6DIJ5 | High mobility group protein 20A OS=Xenopus tropicalis OX=8364 GN=hmg20a PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002175 (this species only) |
| Transcription factor family | HMG · all TF in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00505 all species → | HMG_box | HMG (high mobility group) box | Domain | Interproscan |
| PF12171 all species → | zf-C2H2_jaz | Zinc-finger double-stranded RNA-binding | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR009071 all species → | Domain | High mobility group box domain | Interproscan |
| IPR036236 all species → | Homologous_superfamily | Zinc finger C2H2 superfamily | Interproscan |
| IPR022755 all species → | Domain | Zinc finger, double-stranded RNA binding | Interproscan |
| IPR036910 all species → | Homologous_superfamily | High mobility group box domain superfamily | Interproscan |
| IPR051965 all species → | Family | Chromatin Regulation and Neuronal Gene Expression | Interproscan |
| IPR003604 all species → | Domain | Matrin/U1-C-like, C2H2-type zinc finger | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46040 all species → | HIGH MOBILITY GROUP PROTEIN 2 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0010468 all species → | Biological Process | regulation of gene expression | Interproscan |
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K24660 | HMG20A; high mobility group protein 20A | - | Chromosome and associated proteins | ko03036 | deepkoala |
