Gene detail

Detailed information of BRAKERLUSP00000014656.1 in Blastomussa wellsi

Genomic Location: not available for this species
NR annotation: XP_020624506.1, VPS10 domain-containing receptor SorCS2-like [Orbicella faveolata]
Species Blastomussa wellsi · all data for this species · gene families

Sequence

CDS

BRAKERLUST00000014656

ATGGCGTCTAGGTGGCGGGTTGTAAACATCTTGTGCTATTTTGTATTAACTTGCACTCTTCTAACAATCTCAGTTTCCAATGCGTTCCGTCTACGTGACATTGGAAACACGATAAAACACATTCCGTTGAAAAGAGAAAGTCCCGATCGTGGATTCCATTTCTTTCGAGGGGCTGACTTCCACTTTGACAAGGAAATACAAAAGTTGAATAATTTCAGATTGAGGCGAAGTGCGGAAGATTCTCTCCGTGTCCACAATCATACGAAAATATCAGAAGAGTTCGAACTTAAAGGAGACAACCATACCACAGCATTTTTGCACTGGTCAGGGAAAAAAAGTTCGGTTATTTATATATACACTTGCAGGATAGTTAATCAAACTGAAAGTGAGGATGTCATTTGTGAAGATGCATACTTCTGGAGATCAACTGATTATGGAAGCACGTTTAAACGTGAAGATTACAAATTTCAGTCACAGCCCATTAACAATGTGGATTTTTGTGATAGTAACCACAAAAAGGTTATCGTCAGTGTTCTGAAGCCTAAACCTACTATGTACATCTCAGATGATGAAGGGAACACTTTCAATTTAGCCTACTTGAATTTCTCTCCTCATGTCATTTCCTGTAATCCTGTATCAGACAATCTCATTGTGGCTCATGatcaacaaacaaaaaagGTTTACTATTCAAGTGATGATGGCCAAAGATGGACCTTACTAGCTGACAATGTCCTGAGACATTCCTGGGCACCAGCTCAAGTTAAAGGAAAGAACACAGCAATCTTTTTAGAAGTGCAGACTAACAAGAAGTATACCTCAGAGTTGAAACATGCAAAGTTGCCCTGTAGCAGAAATCCTGGATCTGAATGCTTGCAAATTTTTGACAAGTATTTGGGGCATTTCATGTCAAATACTTTGCAGGTGGAAGGCAAATATGTGTTTGTCCAGGCCTACAAAGTTGTTGATGCCAGTGAGAATGAAATGATGGTGGTTGTGCGGCATGAAGATGATGACAAAAGTTATTACAACTTATATGTGTCTGATATGATGGGAGTAAAGTATGCCCTCTCCTTGGAAAATATCCTGAGTGACAGGCGTGAAGTATGGGGGCAGAACACAACACTGGTTGATATTTATAGGGTGAAAGTTCTCAATGGAACATACCTGGCAAATGTTTACATAGAAGGTGCATTCAGTGGCTCCCAAAAATTCAGGTCTGTGATAACATTCAACAAGGGAGGTTCATGGCATCCACTGAAGTCCCCAGATGTTGATCACAATGGCCAACCTACAAACTGCTTTCTGCCATACTGTTCTCTCCACATCCACCTGTCAGTGAGCCACTGGTACTACTACATCCCTACCGTCATGTCTTCTAAGTCAGCTGTAGGGATACTTGTGGCGCAAGGCAACTTAGGCAATGGGCTGGGAGAAGGAGCAATTGGGGTTTTTCTTTCCACGGATGGAGGACTAACATGGACCAAAgaGTTTCACAGCTTTCATGATTTTGTTATTGGAGACCATGGTGGGATCCTCGCAGCTGTCCCCATGTACCGTAATGCTGATAAAGTGTGGTACAGTTGTACTGAAGGAAAATCCTGGTCAAATATAACTTTAGGAAGTAAACCGGTCAATGTATATGGCATGGTGACGGAACCAGGAGAAACAACGTTGATATTCAATGTGTTTGGTAAATATGCAATGCAGTCATTCCAGTGGCTCTCAGTAAAActgaacttcacttcagttatGGACCAGAAGTGTCTGCCAGACAACTACACGTACTGGTCACCCAATGATGAGCGTGTTGATGGAGAATGCTTGTTAGGCCAGCACATAGTGTTTGAACGCCGTAAGTCAGGAGATTGCTGCTTCAATGGCGACGAGTACGAAAGAGAAATCAACATTTCTACCTGCACTTGTGAGATTGATGATTTTGAGTGTGACTTTGGCTATGAGCACAGCATGCTTGGTGAAGTGTGTTATGTCACCAGCTCCGCTACTCCTGTACCCGCTATCTGCCCAGAGGGGAAAATGTATCAGCATTCTCGTGGGTACAGAAAAGTAATTGGAGATCTTTGTAAAGGTGGAGTGGAAAGCAGGCTAATGCCAGAGACGCGACCTTGCCCTATTAAAGcTCCTGGAGAATTAAGCATCAAGTTTGCAGCCGTTTCGAAGACTGTGGAAGTCAACAAACAAGTGAATTTTAACCTGAGCCAGAAACAGGGCTCAACGGAATCCACACGGTACGTCTGGGACTTCGGAGATGGTAGTCCTGTGCTAAACATTACTGGACTCAGTAAGGCAGAGCGTGTGTCACACGTGTACAGCAAACACGGTGACTTTGTTGTACGACTCATGGTTGCCAACATGGCTGGGAGGTCTGTGGTAACTGCTGACATTATTGTCAAAGACCCAATCACTGCAATTGACATTGAGCCACCGCATGCAGTGGTCATTGGAGAGGAAGCCTGGTTCAATGTCACGCTCTACTCCAACAACTTCATGAACCCAGACGAATACTCTCCGTCATATGGCTTTGTACATTTCATGTGGTTTTTTGAAAAAGAtgacaagaacaagaacaagaagccTTTACTAACCTGGGATTACGAGGCGTCACACACGTTCTCGACACCCGGGAAGCATGAAGTGTCTGTGACAGCTATTAGTGTGATAGGACAAACCAGTGCTCATGTTACAATCGTTGTATATGAGGATCTGACCACTGTGCGTCTGTCGTTTGACTTGGCACTGGATGATGAGAATGACAACACCAAGGAATGGAGAGATTATTTTTCCCAGCTTCTCCACGATGCTCTTTGCCAGGCGCTGGATGTTGATTCCTCGCGTCTTGATGTTGTAGTGTTGCGTGGAAAGCCAACAAGAAGTGATGTGTCCATCACGCCAGCTGTAACGAACACCAGCAAGACAAGATCAGAGATTGTGACACTTTTGAAAGACAAAGTGTATGTAGGGGCAGTGAAGATCCAATTGCCGAAAGACACGACTATCAGAGTCACACATGTTGAGGTGCTTCCAGACAGAGGATTTGGTTACGGTCCTTCTCCGACTGATTCTACCAACTCTGGAGTAGGGACGCGTTTGGCTATTGGCGTTGGTGTTGCAGCGGGTCTGGTTGTTATTTTCCTGATAGGGACTCTCCTGTATTTCCTCAGACGCTACAATCTGCTTCGTTCCCGTTACACACATTTGCGTTTGTACAGTGACGGTGCACAGCTGAGGGACCCCCTGATAGAGGACGAGACTGAAGTTGAGCAATCCCTTCACCCCCAGCCAGGGGGATCACTGCGATACGTACCAGTGCCTACCAGTGTAGTCCCAGAACCTGATAGCGATGAAGAACTCATTGACAACTTTAACGGTGGATCGTTGACTCTGATGCTTGCCGGCCAAAATGGTCAAGTACAAGAAGAAAATGTAAACGGCTGA

Transcript

BRAKERLUST00000014656

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9EPR5	VPS10 domain-containing receptor SorCS2 OS=Mus musculus OX=10090 GN=Sorcs2 PE=1 SV=2
Q96PQ0	VPS10 domain-containing receptor SorCS2 OS=Homo sapiens OX=9606 GN=SORCS2 PE=1 SV=3
Q98930	Sortilin-related receptor (Fragment) OS=Gallus gallus OX=9031 GN=SORL1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000636 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15902 all species →	Sortilin-Vps10	Sortilin, neurotensin receptor 3,	Repeat	Interproscan
PF15901 all species →	Sortilin_C	Sortilin, neurotensin receptor 3, C-terminal	Domain	Interproscan
PF18911 all species →	PKD_4	PKD domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031778 all species →	Domain	Sortilin, N-terminal	Interproscan
IPR031777 all species →	Domain	Sortilin, C-terminal	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR035986 all species →	Homologous_superfamily	PKD domain superfamily	Interproscan
IPR022409 all species →	Domain	PKD/Chitinase domain	Interproscan
IPR000601 all species →	Domain	PKD domain	Interproscan
IPR006581 all species →	Domain	VPS10	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR050310 all species →	Family	VPS10-related sortilin family receptors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12106 all species →	SORTILIN RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0006892 all species →	Biological Process	post-Golgi vesicle-mediated transport	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERLUSP00000014656.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.