Gene detail

Detailed information of BRAKERLUSP00000014973.1 in Blastomussa wellsi

Genomic Location: chr2:19469806...19475958
NR annotation: XP_020619241.1, GPI ethanolamine phosphate transferase 1-like [Orbicella faveolata]
Species Blastomussa wellsi · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERLUST00000014973

atggcggccgcgaAGTTGTCATTGTTGGTCCTTGGAATAATAGTGCATGTCATCTACCTAGCCTCTATATTCGATATTTATTTTACTTCTCCTCTTGTCCACGGTATGGCTCCTTATAAATCTACTCACAAACCGCCTGCCAAAAGGCTGGTTTTGTTTGTTGCGGACGGTTTGAGAGCGGACAAATTTTATGAAGTTGATCAACACGGAAGGACGCGCGCGCCGTATCTCAGAGAAATTATCGAGAACATTGGTAGCTGGGGCGTGTCACACACGCGAGTTCCTACAGAGTCTCGCCCTGGACATGTTGCTCTTATCGCTGGATTTTATGAGGACGTTAGCGCTGTGGCTAAAGGCTGGAAAGAAAACCCAGTAGAATTTGACTCTACCTTTAATGAAAGCCTCTACACATGGGCATGGGGAAGTCCTGATATCCTGCCAATGTTTTCCAAGGGGGCCAGTGGAGGCCATGTCTTCACCTCTATGTATAAAAATGTTGAGGAAGACTTTGCAAATGAAGATGCTGCTAAACTGGACACTTGGGTATTTAATGAAGTCAGAGGATTCTTTGGTGCTGCAAGTAGAAATGAGACATTGAGGAAGATGCTTCATGAAGAACAAATAGTATTTTTCTTTCACCTTCTTGGAATTGACACCAATGGTCATGCACACAGACCAACATCACAAGAATATGTCAGGAATATAGCTGTGGTCGATGAAGGAATAAAAGAGATGGAGAAATTGATTGAAGAATTTTATAACCAGGATGGTCGAACGGCATATGTAATGACAGCTGATCACGGCATGACCAACTGGGGTTCACATGGCGCAGGGCATCCTCACGAGACACTGACACCCTTAGTGGCTTGGGGAGCGGGTGTGAGGGGACCTATGGCTCCCATTTACGGCGCTGATATTCCAACAGAGACACTTGAATGGAATCTTGCTCATTTGAGGAGAACAGATGTCAATCAAGCTGATATTGCACCACTAATGACTTCCCTGATTGGTGTACCATTTCCCTTAAACTCTGTGGGCATTTTACCAGTGGAATATCTGAACAATACCGAGCAGTATATTGCAGAAAACCTCTTTATGAATTCCCAACAGATTCTTGCTCAGTATGACGTCAAAGAGTTGTTCAGAAAAGAAACATCTCTATGGTTTTGGCCTTTCACTTTGTTGGCAGGTGCAAAGAAAACAGGTATGGTCCGTGACATAAAGGAGTTCATGCGAGCCAAGAAGTATACAGAAGCTGGCAGCCTCAGCCGAGATCTAATAAAGCTTGCATTAGAAGGACTCAATTATTACCAGAACTATGACAGAGTGTTTTTAAATTTCGTGGTTACTCTTGGCTTTCTAGGATGGGTATTCTGTATTATGCTACAGATAATCGAGGAGCATAGCGACGTTGTGAAAGAAGCGTCAAAACTCGGCAAAGGAAGAATCCATCCCTTGGTGAAGGTCTCGTTGGTAGACGCTACATCTAGTGCTTTCGCTGTTCTTGTCGTTCTTTTGCTGTTGATTCAAAAAGCCCCGTGGATGTATTACAGTTACTGCTTAATGCCGTTGGTGTTTTGGAACCGCATTGCGAAGAGACTTCACGTGATTCGTGCTGCGTTGGACTACACTCGTGCGAAGCAGCTTCAGCGTCGAGTGTTATTTACGGTCTTATCTGGTGCAGTTTCGTTAGAGATTCTTGTGATGAGTTTCTTCCGGCGCGAGATTCTCTCTGTTGGTCTTGTGTGTCTTGCTTTCTGGCCATTCACCACTACACTATACACAAACTGCAGGGGGTCCGTAGTGTGCTGGATGGTCCTTAGCTTCGCTCTGTCTGTATTTCCTGTTCTTCCTGTGGTTGGACGCGAGGCGAACTACTTCTTGGTGTACTTGGCTGGGGTTTTAACTTTGGCCGCTTTTGCCTGTCTGTTGCTTTACGCGTCCAGTATTTCACAGCTGCTTAAGACGGAAATAACGAAATCGTATAAAATACTCCTTCCTCAAGCGCTACTCACGGGCTTTGCGGTTTATATTGTGAACAGTACGGCATCAAGCCTGCGGCGTAAACTTGGTCTTCCAGTAGTTAACCAACTTGGAAGTTGGACGATTTTCTTTTCGTCGTTTTTGCTTCCGTTGATCAACTCCAGTAATTTAACCATCAGATTGTCTAGCATCGCGATTGCATTCTCTTCTGTGTACTTACTGATGAGCACCGCCTACGAATGCTTGTTTCTTTTAGTCCTCTCGCTTCTTATGGGTGCGTGGCTGTTATCTGAGCATAAACTTTCTGGCAAAACGCTCAACACGCTTTTAGAAACGCAACTGAGTAGCGACAATTCCGCAGCGATTCACCAGCCAGCTTGGAAGGTGCTCACTAAAGGCATCGACACCCCGCTTATTAGAAAACTCACCTTAGAAGACCTTCGCTGTGCAtatttcttcgtcttcttcaTCGTGGTAGCGTTCTTCGGGACAGGAAACATTGCAAGCATAAACAGTTTTGACCCTGCGTCTGTTTACTGTTTCTTAACAGTATTTTCACCGTTTATCATGGGTGCTTTGCTGCTTTGTAAAGTCCTGATCCCATTTGTGATTGTAGCGTGCGCGTTCGATGCTATTCACGTGGTGTTATCGATCCCTGTTCAGAGCTTAGTGGTGGTCGTACTTGTAATGACGGATCTTATGGGGCTGCATTTCTTTTACCTTGTGCAGGATAGCGGCAGTTGGCTGGATATTGGAACAAGCATCAGTCATTATGTTATTATGATGGCCTTTATTATCTTCTTGCTTCCAATATTCGGTTTAGCGAGACTTTTCACCGGTGCGTCGTTGTCGTTGAGGACGAGCAAGAAAAGAGCCTGA

Transcript

BRAKERLUST00000014973

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O95427	GPI ethanolamine phosphate transferase 1 OS=Homo sapiens OX=9606 GN=PIGN PE=1 SV=1
Q9R1S3	GPI ethanolamine phosphate transferase 1 OS=Mus musculus OX=10090 GN=Pign PE=1 SV=2
Q7SAP1	GPI ethanolamine phosphate transferase 1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=mcd-4 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007473 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01663 all species →	Phosphodiest	Type I phosphodiesterase / nucleotide pyrophosphatase	Family	Interproscan
PF04987 all species →	PigN	Phosphatidylinositolglycan class N (PIG-N)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017850 all species →	Homologous_superfamily	Alkaline-phosphatase-like, core domain superfamily	Interproscan
IPR007070 all species →	Family	GPI ethanolamine phosphate transferase 1	Interproscan
IPR037671 all species →	Domain	GPI ethanolamine phosphate transferase 1, N-terminal	Interproscan
IPR002591 all species →	Family	Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase	Interproscan
IPR017852 all species →	Domain	GPI ethanolamine phosphate transferase 1, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12250 all species →	PHOSPHATIDYLINOSITOL GLYCAN, CLASS N	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0006506 all species →	Biological Process	GPI anchor biosynthetic process	Interproscan
GO:0051377 all species →	Molecular Function	mannose-ethanolamine phosphotransferase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016740 all species →	Molecular Function	transferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05285	PIGN; GPI ethanolamine phosphate transferase 1	EC:2.7.-.-	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	ko00563	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Blastomussa wellsi tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Blastomussa wellsi, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →