Gene detail

Detailed information of BRAKERLUSP00000016165.1 in Blastomussa wellsi

Genomic Location: not available for this species
NR annotation: KAJ7365979.1, Rab guanyl-nucleotide exchange factor [Desmophyllum pertusum]
Species abbreviation BWELL · all data for this species · gene families

Sequence

CDS

BRAKERLUST00000016165

ATGGACCTTCATTATCCATTTCTTTACTTTTCGTTGGATAATATTCTTCTTCTAATGAGCTGCATTCTGACGCAACGAAGGATTGTTTTCCTCTCATCGTCATACTCCCTCCTCACTCCTATCATTGAGAGCTTATTTACCTTCATTCAACCATTTTCGTGGAGCTGGACCTATGTACCAATTCTTCCAAGTGCACTTCTGGATCTTGTTGAGGCGCCTGGTGCCTTTATCATGGGATGTCACACACAGCACAAAAGTCAGATTCAACGGGTTGTCGTGGAGATGGATGAGCTATCCAGTATAGTCATTGCCGACATTGCCGATGGATCAGTAACATTGCATCCAAATGCAAAAATTCCGCGGCTGCCAACTTATGCTACGGATATGTATAAATTCAGAATGAAAAACGCAGTATTCCACTTTGACCGGCTACTCATTCAAAGACAAACGTTCTACTCTTTAAAAGAATTGCAAGAGGAAAGAGAACAGTTTGCGAGAGATTTTCAACAGCTCGTTTTGGCATCCTCGGTAGAGATGATGTTACGAATGTTCAGtgaaatAAAGACTTTCATTGAGAGGCAGGAAGATCTTTTCTTTGATATGGATTCTTTCATCGACTCAAAGCCTGCAGAAGATCAAGAGTTTTATCGCGAGGTGTGCAAGAGCCATGCATTCAGCACGTTTCTTTACGATCTTATGAACGATCCAGAAAAGACAGACTACTTCACTCTGATGGCTCAGAAAACGAGAGTTGTTCACAAGGTGGCACCTTTGAGAAAAAGAAGTTCCTCCACCGTGCCTGTCCCAATCATATCCGAAGAATATTTTGTGAACCCACAGAAAAATATGAGTATCTTCGTTCTGCCGCCATTCGCTCTTGAAGGAATTTACACAGGGAGTTTCTACGAAGAATACTTGAGATCGCTAGATGCCAAAATATCGGATCTTTGGAACAAGTCTTCTAGTCTTCTTGCCAACTACTTATATTTGCGCGGGATGTTAAGAATTGCGCGTGGACAGAACATCAAGGCAGTGGATGACTTCTATGCAGTTTCGTCAAGAAATGTGCAACTTTTTCCAACCACGACTGTGCAGGAAATTATGTGCAAACTGAAAGATGAAGAATTAGAAGAGCTACGAACAAGACACTTTTGGAGGAAAGCGGAAAACTTAAGACTGCAATCCAAGgAAAAAGTAGACTTCCGGCTAGATAGGAAAGAAGTGGTTACGTCTGCAATTCCGTCGACTCCTTTGGTTCTTGAAGAATTTGTAAAGCATGTCAGCATGCTACAGATTGCTAGCAGCCAGGATGCCGGCACAAGACTCTTCCACGCTTTGACAATGAATTCCAAGGCGGAAGCCGTGGATCCTGAAACGTTTGCAGCTTTCTATGAAGCTTTTAACCAGGCCAGTATCAAAGCCAAGAGTGTTTCACTTCGTAATATTCTCTTAGCAGAAAATGAGTATGTGTTGAAGATATCCCAACATATCAAGACCAACAAGGGAATGGGCTGGCTTGTTCTCACAGTTAACAGGTTGTTGTTCTTGCCTGATGGAAAACAAGATTGTACTCCAGTTGTGAGCAATGGAGACGTTATGAATGTGGAGCCAATCTCTGAAGGCCGAGTTCTCTCTCGTGGTGTTACAGCTATTAAAATAACCAGCAAAAGCTACGCTTCAGTATCGTTTGAAGCTTCCGTTAAGGAGGAAAAGGATTCCTGGCGTAATTGTTTGTTGGAAATCAAAGCAGGATACGAGATTGCGGACGCTTGGAAGGATCCGCAGATAATAAAACAAGCCGCTCAGAATGTGATTATAGCAGACGCACTAAGGCAAAGTTTTTATCCGGAGCAAACTGCAATGCATGTCCTCTATTTTAGCACACTAACTGACTTTAGAGAGAAGCTGTCTGACCATACCAGAAAGaCACTCGTCAAGAGAGTAAGTCCATCACCACAGGACATGGAGAAAACAACAGTCGAGGCACTTCTCTACGTTGCAGCCTCAAAAGATAGCGGACCAAAGGTGTGGTGTGCTATGGGCTCTGGTGATGTTGTCGTGATAGATGCAACCGAGTGGGAATACGAGACACACATGAGACACACAAAAGACAGAGTGAGTTGCCTCTTGCCGGTAGGAAAGAACCAAGTCTGGGCAGGTTCCTTAGACACGACTATCTACGTCATCAACACGCTCACTGGAAAGGCTGATCAGCAACTCCTGGGACATCACGACTCCCTCTCGCACATGACCAAAACTAACGATATTGACGGGCAGACCACAGTATGGAGCGCCAGTTCGAATGGACAGATCGTAGGATGGGATCCTGTGACTCTCACACCTAAGAAAGAGTTTCAAGTCCAACTGAACAGGAGGGACAGGAAAACGCTCCTCTGGTTCGCTGCTGTTGGAAATACCTTCTGGTGTGCAACCAAATTTTCAGTTTACGTCATTGCTTACAAGGAAGCTGACGAAGCCACCAAAGTTTTAACCCCGAAGAAAGACATCCCAATGAGCATTGACTGCATGTGTAAAGTGTCCGACACGCAGGTGTGGGCGGGCTGTGACAGGCAAGGTGTTATCGTCATTTGGAACACTGATACTTGTGAAAACGAACATCGTCAAGTTTGCGAATGTCGTGGCTTCACGTACATGCTCCAAGTAGATAACAAGGTCTGGGCTGGAACTAAAGGTGGCACAATTTATGTCATGAACACAGCAACGTGCAAAGCAGAGATGGAGTTGTGTTTACACCAGGACCGGGTTCGCTCAATGTGCATAACTGACTACGGGCTTGTTATATCGGGCCCCGGGTCACGGGACGGGCGCATTGCCGTTTGGGCATCACATCTTACAACCGATAATCCCAAATGTTCCGACACCGAGGAAGAAACAGAAGACCCTAGTATTTGTGAGGAGGATGGCTTTGAATTTATTGGCAAGAAAGAAACAGTTCGGTTCGATCTGGGACGCAACCAAACACGCTACATACCAAAGTCAAAGTGTTTTTTGACAAAATCTATTACTTGA

Transcript

BRAKERLUST00000016165

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2RT67	DENN domain-containing protein 3 OS=Mus musculus OX=10090 GN=Dennd3 PE=1 SV=2
A2RUS2	DENN domain-containing protein 3 OS=Homo sapiens OX=9606 GN=DENND3 PE=1 SV=2
O95248	Myotubularin-related protein 5 OS=Homo sapiens OX=9606 GN=SBF1 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002251 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02141 all species →	DENN	DENN (AEX-3) domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037516 all species →	Domain	Tripartite DENN domain	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001194 all species →	Domain	cDENN domain	Interproscan
IPR011047 all species →	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR043153 all species →	Homologous_superfamily	DENN domain, C-terminal lobe	Interproscan
IPR051696 all species →	Family	DENN Domain-Containing GEFs	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12296 all species →	DENN DOMAIN-CONTAINING PROTEIN 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0031410 all species →	Cellular Component	cytoplasmic vesicle	Interproscan
GO:0032483 all species →	Biological Process	regulation of Rab protein signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERLUSP00000016165.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.