Detailed information of BRAKERLUSP00000016287.1 in Blastomussa wellsi

Genomic Location: chr3:17178725...17181637
NR annotation: XP_020629518.1, FAD-linked oxidoreductase DDB_G0289697-like [Orbicella faveolata]
Species Blastomussa wellsi · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A0A2V5HCN7FAD-linked oxidoreductase pyvE OS=Aspergillus violaceofuscus (strain CBS 115571) OX=1450538 GN=pyvE PE=3 SV=1
Q796Y5Uncharacterized FAD-linked oxidoreductase YgaK OS=Bacillus subtilis (strain 168) OX=224308 GN=ygaK PE=3 SV=4
Q0CSA1FAD-linked oxidoreductase tazG OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=tazG PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002346 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08031
all species →
BBEBerberine and berberine like DomainInterproscan
PF01565
all species →
FAD_binding_4FAD binding domain DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006093
all species →
Binding_siteOxygen oxidoreductase covalent FAD-binding siteInterproscan
IPR016169
all species →
Homologous_superfamilyFAD-binding, type PCMH, subdomain 2Interproscan
IPR036318
all species →
Homologous_superfamilyFAD-binding, type PCMH-like superfamilyInterproscan
IPR016166
all species →
DomainFAD-binding domain, PCMH-typeInterproscan
IPR012951
all species →
DomainBerberine/berberine-likeInterproscan
IPR006094
all species →
DomainFAD linked oxidase, N-terminalInterproscan
IPR050416
all species →
FamilyFAD-linked Oxidoreductases in Biosynthetic PathwaysInterproscan
IPR016167
all species →
Homologous_superfamilyFAD-binding, type PCMH, subdomain 1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR42973
all species →
BINDING OXIDOREDUCTASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G17690)-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016491
all species →
Molecular Functionoxidoreductase activityInterproscan
GO:0050660
all species →
Molecular Functionflavin adenine dinucleotide bindingInterproscan
GO:0071949
all species →
Molecular FunctionFAD bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for BRAKERLUSP00000016287.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Blastomussa wellsi tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Blastomussa wellsi, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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