Gene detail

Detailed information of BRAKERLUSP00000016719.1 in Blastomussa wellsi

Genomic Location: not available for this species
NR annotation: XP_020610432.1, uncharacterized protein LOC110049003 [Orbicella faveolata]
Species abbreviation BWELL · all data for this species · gene families

Sequence

CDS

BRAKERLUST00000016719

ATGAAGTCGGCAGAAAGCTCAATGAATTCACACAGCAAAGCAAACAAACTCTGGGCCTGTGTGTTGGCCAATTCACCACCTAGCACGTGGCAGCATGAAAACCTAGAAGGTGTCATTAAGTATGGAATAATCATTAGAAGGCAACCAACAACTACAGAATTCAAACGCATCAAAAAGCTGCTTTTTACTTCACGTGACAAGTTGGGCTGGGAAAGGACTCATGACCTGTTTTACATGCTGCTTCAATCAGAAGACGATAACCCCTCGGAGGTCGGCCTCAACTCGGTTTTTGCCAAACTGAGTAAGACAAATGTGTCCGAGAAAAGCTCCATTAAGAACAATTTCCGTTTTAAAGCCACGCCAGTTTCTAGGAGAGTGACATGCATCAGTATGTCCTGCAGTCATGCAGCTGTAGTAACTGCCGACAACAAAAGCGTTTCAACATGGGGCCACAGAGAAGAAGGAGCACTTGGCCTTGAGGAGCACTTGATTTCAAATTTTGATCCTCCTTCTCCAACACCTGTAGCATCCATAAACTGTCAAGTCAAAGAGGTGGCTTGTGGTGCAGATTTTACTTTGATGTTGACAACAGAGGGGCGGATGTATTCTTGTGGATCAGGTGCTCTGGGAAAGTTGGGCCACGGGGACGAAACCGATAGACCATTGCCTACGTTGATTGAATCACTCTGGAACATCCAAGCCATTGCGGTAGCAGGTTACCATGCAGTGGCACTAACCAACAGAGGTGTCCTGTACCAGTGGGGACTGGAGTGTGCTGATGAGGAACTAGCGCGGTCTATTGCAGTTCCCACAAAAGTTGGTCAGGTCGACAATGTCAAAGTGACATCTGTAGCTTGTGGCAGCCATCACTCTGTCTGTTTGGCTAATGGAGTATGGTACAACGGGATTGCGTTTGCGTGGGGAAGAGGCTCACATGGCCGCCTTGGCTTCGGTCATCGCCGTAACTTGTTCGTTCCGCGATATATCAACGAACTGTATTCCACTAGTACGTTTATGAAGCAAGTTTCTGCTGGTGGCAAACACACCGGGTTTCTTACTTTGAAAGGGGAAGTGTACACATGTGGTAATAATGCATTTGGGCAGCTTGGTTACTTTACTGCTTCTGGAGACAGTGATGTACCGCGCAAGGTCTGTCTCGGAAAGAATTCCACAGGGGATGAAATCAGGGCGAAAGAGCTGTGCTGCAATGACGACTACACGATGATATTAACTAATGATGACGATGTAATGCTGTGGGGAAAGTGCCACTACGGGTCAAAATTGGAAGATCCAATACCTTTTGATGTCGAAAGCAATGCTTCCACTGACCCTGCCTCCAGTGGTCGGGACGTGGGCATCAGGGATGTCACCACTTGTCGTGTGCCTTCGTGGGAGTCATGCATTGAGCTTGTTGTGGCTCTGACCAACACCAGCAGTCTGCTATTTTGTGCTGGAATTAAACCTGAGTCTGATTGTCAGGCTAAAGACGAGCGTACACCTCCGATTCGGTGTAACAAGACAAATCTGACTACTCTTTGCTCTGTTGGATCAGTTTTGGTCAGCATGGATCAACAAGGCACAGCCTATTATGTGAACATCTGGTGTTGGTTGTTGCCTCTTTTGTCCTTCAATCTAGAGACGATGCCAAAAGACCTCATACATGCTTTGTTCTCCAAGCTAAATGAATCAGACACTGAGAACCTACCACCAATAGAGTTCACAGCCATACCGTTTTGCCCAAGTTTAATGGCAGTTGAGACTAGTCTCAGCACTTTTCTCTTTTGTTCTAACATTGGCGATGTATATAGTTGGTCTCCAAGGGAAGACAAAGAGGCTGTGCATCACAAAGAATTAAACAGTGAAATAATCGTGCAAATTGCTTGTGGAGCAGGCCACCTGGTCGCTTTATCAGACAGAGGAATGCTGTTTACATGTGGAGATGGCCGTCGTGGTCAGTTGGGACTTGGCACGTTTGAAAGTACGAAGACGTTCCAGCTGGTGGCGCTAACAGAATTCGAAAGGGTGCAAACTGTATGTTGTGGCTGGGCAAGCACTGTCGTTCTCTCAAAACAAGGAAAGGTATACTTCTGGGGCCAGCTAGATTTGCCCAGATCCGAGAAGGTAAAGAGAAAACAATCGACCATCACTACCTTGACAGAACCACTTGATAAAATAACCCTTCGACAAAAGCAGGAGAATGGCTCTCCTCCAGTGGTGTTCCAAGCGGAAGTTAAGGGAGAAACTGGAATTGTGGAGCATCACCCAGCTGTAGTTGGCAGACCCTTGGAAGTTGAAATATTGCAGAGAGATAGAGACGGAAGCACGAGCAGTAGTTCATGTACGGAATTTCGAGCTGAAGTAGTTGACTTCCAACATTTGAATAAAGTCCACTCTAAAGGTGACATAAAGCTGTCACATAGTGGAGATGGAGTCTGTGTTGCTTCCGTTGTTTTCTATTCCGAAGGTTCCTTCAGAGTCTCCATCACGAGAAATGGAAAGAATGTGCTTGGAAGTCCGTTCAAAGTGAATGCAGAGAAAGGTTGTTTGACGAAAAGGAGTAAATTGTCTCTGATTGGATCTGACATTGAGTGTATTAGAGCAGTGGGAGGGGTTCTTCAGCAAGCAATCAGTGCTAAAGACGCGGGAGCTGAAATATGGGGAGTTCCCGGTATCACCGCCGATCAAGTGACGCAGGAAGCACTGATGCTAGCCTCGATGACCGACAGCGGAATCTACATCTACGTTTGGGATGCCTGTTCTGGTAATCTTCCAGAGGAGAACCTCAACTTCTGGCTGTACCAACTGTCAGTACATGCTCCATCCGCCATTGTAATCCTACTGGGGGTTAATGTCACTGTTGCACATGCCAATGAAATTGATTTGAAGCCATTCCAAAAAGTAAATCCAATGATGAAGCGATCCATTTTTGCTGGTACCACCTTTGCTTCAGAGCCTGGCAGGTTATTGGAGGACGTACTGTTGGTAGTAAGCGAAAAAAACAGCCTTCAAAGTCTCCTGTGGCACAGATTTGAGAGCCTGGCTTTGAAAGTTATTGAAAAGAAGAGGAGGGGATTTGAAGTTCTTGATCATTCCACCTTCAAGTGTATCGCCAGTGAGTGCGGAATCCAAAGGGATTACCTGTGTAAGAAAGCTGCCGAACACCTGGAGCTGACAGGAGTGGGTTTGGTATTAGGAGGGGATTCTTTCTTCCTAGTTCTTCAGCCCTCCTGGCTTTCAAGGCAACTTAATGAAATGGCCAAATCCAGTCACTTTGGAGCATTAGACAGGTTCTCCTTAGATTCGGCGAAGCAGTTCATAGTTAGCTTACTGATTGAAAAGCACGTGGCCGTCGAACGAATGGATAAGAGTACAATCCACATCATTCCTTACCTGTCTTTGATACCAGAAGAAAATTGGCACTTGGTAGACGAGTCGAAATACACAATTTACAGGCATCTAGTGTTAGCCTTGTCACCCTATCACCTCTATGCCATATTCCAAGATCTCGCTGCGACCCTTCTACAGGACTTCAGTCGTGTGACCGTTGGAAAATACTCTATGGTCATCTACAGTGATCAGTACGAGTGCCGCATTGACTGCGGGCCTTGTGTGGTCAACAGAGCTGTTACAGAGGTAAGGGTTACTGTGCGGGCGGCCAGCCAAGATATGTGTATTACAGGTGCAGATGTAACAGTGGGTTTCCTCCAAACATGCTTTGCCAGATTTTGCAGCTCCTGTGAGATCAGTGTAAAGGTCTCGTGCAGCGTCTGCAGACGGTACTACGTTGATTTGTCCATTGTACAAGAAGCAGCAGGGCGAGGCGTGACCGAGGGTGAGTGTGGAAGCTGTCATGGAAAGACGTTAATTGACGAGTTGTTGAATGGTTTCATAGATCCGCGGCCGATCACAGAGTTGGACGGGCATCCTTTACATAGACAACAGCAACCAGGTAGCTCGTACTCCAAAGCCGAGATTCCCACCTCAAACATGCTGCTGGGTCCCCTGATGAGGTACTTTGGTGACAGGGAGGAGAGGCACGGGGCGAAGCTACTAAAGGAGATCAAAACCATGTTTGAAGACATGACCAAAGTTTTCGTGGACATGAAAAATTACGATGTTCCGCGGACCGTTTGCCTGCTACCAGAGTTCCAGAGGTCTTCTGTTGTTAAGGCCAATGCAATGAAATTTCTTTTGACGTACAGCCAGCCAAAGTATCGGCTGTTTCTGCTCTGTGAAGGAAATGGAGATGGCACTGAAGTGCACTTTCTTGACTACAGCAAGCACAAAGGCTACAAACTGGAGACCAATTCAGCTGCTGCCCTCATCAAGGAAAGTGTTGACCTGTTGCGGTTTGGTTTGCAGCTGCTCACTTCCTTTTCGTCTGTCGTTAACTTCGCCAAAGGACTGGGTGTAAATGTTGATGAAACTCTCAACGGTATTCTTGGCACTGTGGGTCTGAGTGGGACAATGCTTTGTGCTGTCCCGTGGAAGAATCTTTTTAAAGAGATGGACGGATTTCTTAAGAGTATTGAAGAAGCTTCAGGCTCCATTCGGCAACCAAAAGGCCTCAGCGAGCTATCTGGTCCAGGTCGGGGATATCAAGTGGGAGGTGAAGGCTACGCGTATTTGCGCAAACTTCTATCCGAGCTGGGGACTAAAGACGACTTTGGCGGGTTACAGCAGGAACCTCGCGAAGGGATTGGGGCCATTTGGGTGTGTGCAAAGCACAGCAAGTACAACAACGCCACTACAGCTTTTAATATTATGCCTTAA

Transcript

BRAKERLUST00000016719

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UGK8	Secretion-regulating guanine nucleotide exchange factor OS=Homo sapiens OX=9606 GN=SERGEF PE=1 SV=2
Q3MHW0	Secretion-regulating guanine nucleotide exchange factor OS=Bos taurus OX=9913 GN=SERGEF PE=2 SV=1
Q80YD6	Secretion-regulating guanine nucleotide exchange factor OS=Mus musculus OX=10090 GN=Sergef PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008705 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00415 all species →	RCC1	Regulator of chromosome condensation (RCC1) repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000408 all species →	Repeat	Regulator of chromosome condensation, RCC1	Interproscan
IPR009091 all species →	Homologous_superfamily	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR051210 all species →	Family	Ubiquitin ligases and GEF domain-containing protein	Interproscan
IPR017868 all species →	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR018089 all species →	Active_site	Orotidine 5'-phosphate decarboxylase, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22870 all species →	REGULATOR OF CHROMOSOME CONDENSATION	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004590 all species →	Molecular Function	orotidine-5'-phosphate decarboxylase activity	Interproscan
GO:0006207 all species →	Biological Process	'de novo' pyrimidine nucleobase biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERLUSP00000016719.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.