Gene detail

Detailed information of BRAKERLUSP00000016845.1 in Blastomussa wellsi

Genomic Location: not available for this species
NR annotation: XP_020631932.1, LOW QUALITY PROTEIN: fibrillin-3-like [Orbicella faveolata]
Species Blastomussa wellsi · all data for this species · gene families

Sequence

CDS

BRAKERLUST00000016845

ATGCGCAAAGATATTTGTAACACCAGTTGTTTTTTGGCTTTTGTCAAGATTTGGACGAGTGTCGCGAGCCAGGTTACTGTGAACACGGACGATGTGAGAATTTCATTGGAGGATTCAACTGCCGGTGTGACAGCGGCTTCGTTAGATCAAGCGACAACAAGACTTGTGTTGATGTGGATGAATGTTCGCAGATCAGAGGTATCTGCGGGAACGGGACGTGTGTCAATACCCTCGGGTCGTTCAGACATTGATGAGTGTACAACTCTTGTTGGTGTTTGTCGTAATGGGCGTTGCATAAATAGCATCGGTGGCTTCAATTGTGATTGTATCCCTGGTTACACCGCGACTCCTGACAAAACGCGATGCAGAGACGTGAATGAATGTGACGATAATCCGAGCTATTGTCAAGTTGGAGGTCAGTGTGTGAACACTCCCGGAAGCTACCGCTGTCTCTGTAAAGAAGGCTATGAAGTCGGTAACGGTGGAAGTCACTGCATTGATGTGCGAGTGGGCTTCTGCTTTGACAAGTTTGACGAGAATGGTTGCAGCAATCCTAAAGGGCGTGAGATGAGAAAGTCTGTGTGCTGTTGTACCATGGGTGCAGGATGGGGTGACCCGTGTGAGCTGTGCCCGGGAAAAAACACTTctGATTTCGCCCTCATTTGCCCCAACGGTGTTGGTTTCGTAATAAACAGACACGGTGTTACAgATGTGAACGAATGTCTACACATGACgtctctatgtgaaaacggagAATGTGTCAACAATGATGGAAGCTATCGGTGTAAATGTAAGATGGGTTACCAACTTGATGAAACTGGAAAAAAGTGTGTCGtgttggtggtggtgatgattgagtttgataatgatgatgatgaaaacgatgatgatgaggacgacgacgatgatgatgatgatgatgatgatgatgatgacgatgatgaagATGTCAATGAATGCGCAGAAAGCAACGACCTTTGCGCGTTCCGTTGTGTGAATCAGCCGGGAAGTTATCGATGTATTTGTCCCAGAGGATTCGACATGGCCGCCGACAAAAAGCACTGTAGAGaTATCGACGAATGCCGCGATCAGCCAGGCCTCTGTCAAAATGGTGCATGTAGAAACCTCGCGGGAACTTATATCTGCGACTGTGATTCGGGATATCAGCGGAGTGCGGACGGAAAGGAATGCGAAGTCGAGTACGGTCACTTGTGTCAAAAAATTGCGCAGGTTAAGGAGAATATGACACATATCGATGAATGCGCTATAGACTCGAGTATTTGCCAGTTTACTTGTGCTAACACAGATGGTTCTTACAAATGTACTTGTCCTGTGGGATACGTGCTGCGACCAGACAAGAAAACTTGCACTGaTCACGACGAATGTACCACTGGTCGACATAACTGTCAGCATAACTGTATAAACACTGTAGGCAGTTTCCAGTGCGGCTGTCCTGATGGCTACATGAAAAATGGAATCACGTGTGTTGATAAAGACGAATGTATGACTGATAACAACATTTGTGGCTTTGGAATGTGTGAGAACTTGGCAGGGTCGTACACATGCGTGTGTAACCGTGGATATAAGTACGACGAAACAACCAAGAAATGCGTAGATATAAACGAATGTCGCAGCAGCCTGACATGTGGACAGGCTCAGTGCAGAAATACTTTAGGGTCGTACTACTGTGGCTGTCACCATGGATACGTGCTTAACCCAGATGGCCGATCATGTCAAGATATGAACGAGTGCGCTCTGGGAGTGAGCCCTTGCAGCTTTGGATGTGATAACAAACAAGGCGGATTCAGCTGCCGATGTCCGCACAATTATCACCCAATAGGGGGAGGACATTGTTTGTCGCCTTACGGAGAGGCCTGTTACGAGTGCGCGCTTTCCAAAGGGAACGATAAAGGGGTGCCGCTGGTGGAGAGAAACGAGACAGGAAGCCAGTTCCAGTCTTCCCCGCCGTATCATATTGTGCCAGCGAGCAGTGGTGGCTATGGACAGCAGTTTTCTAATGGTGGAAACCAAGGATACGGTCAACAAAAACAGCAAGGATATGGCGCTCAGACTTACAATCAACAGAATTACGGCCAGCGAAACTGGCAGTCAGCACAACAAAACAATGGCTTTCAATACTCTTTCACTCCGTCGGGAAGCCAGCGGAAACGGCGATCGACGCGTCACCGAATGGAGAAGTTCACAATCGAAATTCCTGCCAACATTACTTCAGCTAAGCCAATCCTAACGCTAGTACCAGTGCTCTCAGAGCTTAACGGAACATTTAATTACATCATTGTTCACGGGAACACAGGTTTATTTAAAGTGGAAGAGCGAAAAGGTGTTTCgtttcttttcattaaaacTCCGCTCTATCGCAAGGGTGTGTTTCGTTTGTGGATTAAAGGTGTCTTACATGAGCCGAAGGAGAAGGAAACAGATTCAAGAgaaggaacaaaaacaaaaccaacaagAAGCAAGGATAAAACAGAAAATGGGACAAAGAAACGGCACCATCCAATGGGGTATTACAAAGCCAAGAAGTTTTCTCTTCATCTAGTTATAAAGGCAGTATAA

Transcript

BRAKERLUST00000016845

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q61555	Fibrillin-2 OS=Mus musculus OX=10090 GN=Fbn2 PE=1 SV=2
P35556	Fibrillin-2 OS=Homo sapiens OX=9606 GN=FBN2 PE=1 SV=3
Q9TV36	Fibrillin-1 OS=Sus scrofa OX=9823 GN=FBN1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003150 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12662 all species →	cEGF	Complement Clr-like EGF-like	Domain	Interproscan
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF00683 all species →	TB	TB domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR036773 all species →	Homologous_superfamily	TGF-beta binding (TB) domain superfamily	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR026823 all species →	Domain	Complement Clr-like EGF domain	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR017878 all species →	Domain	TB domain	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR050751 all species →	Family	Extracellular matrix structural protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24034 all species →	EGF-LIKE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERLUSP00000016845.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.