Genomic Location: chr3:18585521...18594650
NR annotation: KAJ7365862.1, Cytosolic carboxypeptidase 1 [Desmophyllum pertusum]
Species Blastomussa wellsi · all data for this species · gene families
| CDS |
| BRAKERLUST00000016956 |
| Transcript |
| BRAKERLUST00000016956 |
| Protein |
| BRAKERLUSP00000016956.1 |
| UniProt accession | Description |
|---|---|
| A9JRL3 | Cytosolic carboxypeptidase 1 OS=Xenopus tropicalis OX=8364 GN=agtpbp1 PE=2 SV=1 |
| Q9UPW5 | Cytosolic carboxypeptidase 1 OS=Homo sapiens OX=9606 GN=AGTPBP1 PE=1 SV=3 |
| Q641K1 | Cytosolic carboxypeptidase 1 OS=Mus musculus OX=10090 GN=Agtpbp1 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003584 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00246 all species → | Peptidase_M14 | Zinc carboxypeptidase | Domain | Interproscan |
| PF00630 all species → | Filamin | Filamin/ABP280 repeat | Domain | Interproscan |
| PF18027 all species → | Pepdidase_M14_N | Cytosolic carboxypeptidase N-terminal domain | Domain | Interproscan |
| PF00643 all species → | zf-B_box | B-box zinc finger | Domain | Interproscan |
| PF01436 all species → | NHL | NHL repeat | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001258 all species → | Repeat | NHL repeat | Interproscan |
| IPR000834 all species → | Domain | Peptidase M14, carboxypeptidase A | Interproscan |
| IPR017868 all species → | Repeat | Filamin/ABP280 repeat-like | Interproscan |
| IPR033852 all species → | Domain | Cytosolic aminopeptidase 1/4 | Interproscan |
| IPR000315 all species → | Domain | B-box-type zinc finger | Interproscan |
| IPR040626 all species → | Domain | Cytosolic carboxypeptidase, N-terminal | Interproscan |
| IPR001298 all species → | Repeat | Filamin/ABP280 repeat | Interproscan |
| IPR013783 all species → | Homologous_superfamily | Immunoglobulin-like fold | Interproscan |
| IPR011042 all species → | Homologous_superfamily | Six-bladed beta-propeller, TolB-like | Interproscan |
| IPR050821 all species → | Family | Cytosolic carboxypeptidase | Interproscan |
| IPR014756 all species → | Homologous_superfamily | Immunoglobulin E-set | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12756 all species → | CYTOSOLIC CARBOXYPEPTIDASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0004181 all species → | Molecular Function | metallocarboxypeptidase activity | Interproscan |
| GO:0006508 all species → | Biological Process | proteolysis | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0035610 all species → | Biological Process | protein side chain deglutamylation | Interproscan |
BRAKERLUSP00000016956.1.Genes whose expression across the transcriptome samples of Blastomussa wellsi tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Blastomussa wellsi, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |