Detailed information of BRAKERLUSP00000016956.1 in Blastomussa wellsi

Genomic Location: chr3:18585521...18594650
NR annotation: KAJ7365862.1, Cytosolic carboxypeptidase 1 [Desmophyllum pertusum]
Species Blastomussa wellsi · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A9JRL3Cytosolic carboxypeptidase 1 OS=Xenopus tropicalis OX=8364 GN=agtpbp1 PE=2 SV=1
Q9UPW5Cytosolic carboxypeptidase 1 OS=Homo sapiens OX=9606 GN=AGTPBP1 PE=1 SV=3
Q641K1Cytosolic carboxypeptidase 1 OS=Mus musculus OX=10090 GN=Agtpbp1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003584 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00246
all species →
Peptidase_M14Zinc carboxypeptidaseDomainInterproscan
PF00630
all species →
FilaminFilamin/ABP280 repeatDomainInterproscan
PF18027
all species →
Pepdidase_M14_NCytosolic carboxypeptidase N-terminal domainDomainInterproscan
PF00643
all species →
zf-B_boxB-box zinc fingerDomainInterproscan
PF01436
all species →
NHLNHL repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001258
all species →
RepeatNHL repeatInterproscan
IPR000834
all species →
DomainPeptidase M14, carboxypeptidase AInterproscan
IPR017868
all species →
RepeatFilamin/ABP280 repeat-likeInterproscan
IPR033852
all species →
DomainCytosolic aminopeptidase 1/4Interproscan
IPR000315
all species →
DomainB-box-type zinc fingerInterproscan
IPR040626
all species →
DomainCytosolic carboxypeptidase, N-terminalInterproscan
IPR001298
all species →
RepeatFilamin/ABP280 repeatInterproscan
IPR013783
all species →
Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR011042
all species →
Homologous_superfamilySix-bladed beta-propeller, TolB-likeInterproscan
IPR050821
all species →
FamilyCytosolic carboxypeptidaseInterproscan
IPR014756
all species →
Homologous_superfamilyImmunoglobulin E-setInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12756
all species →
CYTOSOLIC CARBOXYPEPTIDASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0004181
all species →
Molecular Functionmetallocarboxypeptidase activityInterproscan
GO:0006508
all species →
Biological ProcessproteolysisInterproscan
GO:0008270
all species →
Molecular Functionzinc ion bindingInterproscan
GO:0035610
all species →
Biological Processprotein side chain deglutamylationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for BRAKERLUSP00000016956.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Blastomussa wellsi tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Blastomussa wellsi, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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