Gene detail

Detailed information of BRAKERLUSP00000016982.1 in Blastomussa wellsi

Genomic Location: not available for this species
NR annotation: XP_020612404.1, laminin subunit gamma-1-like [Orbicella faveolata]
Species Blastomussa wellsi · all data for this species · gene families

Sequence

CDS

BRAKERLUST00000016982

ATGGAGGTCTACTGTCGCTACCGTGCGAAGGAACATTGGAGGAGTTTTGCGTCAGTGCTGAGATTTCTAGCTCTGCTTCTCTTTCTCCGAGGGGTTGATAGCCAATCTCCGTGCTATAACGAAATCACGAAGGCTCCACTCCGATGTATGCCTTCGTTCGGCAACGCTGGTTTCAACAAAGCCGTGATTTCTAACAACACTTGTGGGACGCCTCCGAGCGAGTTTTGCGTGCAAACTGGTGTCACTTCTCCCACAAAGGAATGCGAAATTTGCGATGCAACAAAGGAAAGATATCGACATCCCGCATTTTACATCACCGACATAAAAGATGACCAAAACAGAACGTGGTGGCAGTCCGAGACACTGCTTGACAACCCGGATAAACCAGTGACTCTTACGCTCGATCTTGGAAAAAGCTTCGATGTGTCCTACATCAGAATTCGTTTTCGATCGCCAAGACCTGAGTCGATGGCCATTTACAAGCGAACAAGCACCGATCCAAACGCGCCGTGGATCCCCTATCAATATTTCTCAGCTTCGTGTGAGAAATCTTATAAGGTGAAAACGAACGATATTGCGAAGACAAATCAGCAGCTATTATGCTCGGACGAGTTCAGCAGCATTTCACCCCTAACTGGGGGAAATGTGGCGTTCACCACGTTACAAGGTCGGCCGGATAATCTGAATTTTGACAACAGCCCTGAATTGCAGGAATGGGTTACAGCGAGCGCAATCCGAATTGATTTGGATCGAATGAATACGTTTGGAGACGAAGTGTTTGGTGATTCTAATGTTCTGCGGAGTTACTACTTCGCTATTATTGATTTGACAGTCGGAGGCCGCTGTAAATGCAACGGGCACGCTGCAGAATGCATGGAGAAACAGCTGGGACCTTCTGGGCGACTTCAGCTGAGGTGCATATGTGACCACAGGACGACTGGAGTAGACTGCGAAAAATGCGAACCGCTCTACAATAATCGTCCCTGGGCCAGGGCTACGGAGGATAGCGCCAACGAATGTATTAaGTGCGACTGTAATGGCTTAGCAGACAGCTGTGTATATGATGAGAGCCTTGGCTTTGGACGCTGTGAAAACTGCAAGAGAAATACTGCTGGCCCAAAGTGTGAACGCTGCCGTGACAACTTCTTCCGCCTAACCTCATCAGATGACTGTCAACCTTGTAAATGTGACCCTGTAGGCTCAGTGTCATTGCAGTGTGATCCAACAGGCCAGTGCACCTGTAAACCTGGAGTGACTGGCATCAAATGTGACAAATGTCAGGCAGACTACTTTGGGTTTTCACAGACTGGTTGTAGGCCTTGCCAGTGTTCTCCAGAAGGAACAGATCCCAGTAACACACAGTGTAACGAGAAGGGAGAGTGTTCATGCAAAAGGAATGTCATTGGTGCCAAATGCACCCAATGTAACACAGGCTTTTATGGCTTGGAGAGTTCCAACCCACACGGATGTAGACAGTGCTTTTGTTATGGGCACAGTAGTGTCTGTCTGGAAGCCATTGGTTATACTGGACGAAACATTTCAAATCAGTTTAGAGCAGGTCTGGATGGTTGGACAGTTATCAATGAACAAGGAGCTGACGTAACAGAACAGTATGCCATCCATCATCGTGGAGATTTTGGAGACTCCCACATCAGTGTAACTGCTATAGGAATTGAGGTCCTCTATGTATCAGCTCCAGCTATTTTCCTTGGAGATCACCGCAGCAGCTATGGCCAACTTTTTGGTTTCTCATTTCGTGTAGCTGCTACTGAGGGAGTTCAGGTGGAATCTGACGACATTATTTTGGAAAGTGAAAATGGATTAAAAGTGTCTGCAAGACTCAATGCACAGAACAATCCTATTCCCACTACCACATTTCAAAATTATGTGTTCCGTCTTCATGAAGATCCATCTCTGGGTTGGGAGCCACTACTCAGAGGGTTTGACTTCCAAAAACTCCTTACCAGTTTGAAGTCTATTAAAATTCGAATGAACTATGCACCCCAGGGTACTGGCTTGATTAAGGATGTGTTCTTGGAGACGGCAATAAATGATCCACAGTCTCCATTTCGTGTCAATTGGGTTGAAGAGTGTAGCTGTCCCGCACCTTACACTGGTGATCATTGTGAACAGTGCAGTGTGGGTTACACCAGGCAGAAGGGATCCACAGATAAATATGGCCAGTGTGTTCCTTGCCAGTGTTATGGCCACTCTGAGTCTTGTGATCCAGTGACAGGCGTTTGCAATTGCCAAGACAACACAATTGGTGACAACTGTGATGCATGCAAAGAAGGTTACTATGGTAACCCAACCCAAGGTACCAAAGATGACTGCAAGCCATGTCCCTGCGAATTTGGGTCCCGTTGTATTCTGATTGGCCAGAATGTTGTTTGTACCGATTGTCCCGAGGGACATACAGGGAATCTGTGTGAATACTGTCAAGAAGGTTACTATGGCGACCCAACAGGCCTTTTGGGTTTCCCTACTCGTTGTCAGAAGTGTAACTGCAGTGGAAATATAGACATCAATGCCATTGGAAACTGTAATTCCCTCACTGGTGACTGCTTAAAGTGTGTTTACAACACCAGAAATGGCCTGCTTGAGAGGTGCGAACTTTGTGCCATTGGGTTTTACGGAAATGCTACAGAATATCCAAAACCACAGTGTATTGCTTGTGATTGCTACAATCAAGGCACAGTGACACCTCCTGACCATAATCCCGAGGATCCCCTCCCTTGTGACGATAGAGGCAAGTGCGCTTGCTTGGAAAACGTTATTGGAGAAAAGTGCAACAGCTGCCAAGATACCTACTGGAATGTGGGCTCAGGGTTTGGCTGTGAGCAGTGTTTGTGTAATCCTATTGGTTCTCTAAACAATAGCTGTGACGTCATTACTGGCCAGTGCCCGTGCAAACCTGGTGTGACCGGAAGGACATGTGATCAATGTCAGCCGGATCATTATGGATACTCACTTCAAGGATGTGAACCTTGTCACTGTAACCCAGAAGGTTCTCTTAATGTGAGCTGTAATGAGTACGGCGAATGCAACTGTAAGTTTGGAGTACTGGGAATCAAGTGTAATTCATGTGAGGAAAATAAACACAACTTGACCGCTGGATGCATCAGTTGTCCTCCATGTTATAACGAAATTCAACGATTGATTAACCGTCTGCGAATAAACATCCGTAGACTCGTCAAGATCGTTGACAACTTCAACTCGAGCTCTAGTGGGCAACTTGTCGTGGATACGAACTTTGAGCGTCGCCTGAAGGAATTGACAGAGGCAGTGAATAAACTCCTTGAAAAGGCAGAAAGCTCGAATTCGACTGACCGAGCCCTGCAGAAGCAGCTTGATGATTTAAACAACCGTGTGGATAACATAAACGAGGTCATATCTGATGTGCGGAACAACACGAGCGTGACAGAAGAGCTCATAGCTAGCGCGGTGGGAAATATTTCCGAAGCCGAGGCGTCGATCAATCGATCGCGTTCATTGCTGGATGAGGCGGAGCGGCTGCTGCTTGACAAGGGTGCCACGGCTCTGAATGAGTCGATACACGCAGCGAACAGCTCCTCTGAACAAGCCATTAGGATGGCGGAGATCAAGAATCAGACCACCATTCTGGCAGACAAACACGAAAAGGAAGCCAAGGACGTCATTGAAAAGGCGAACGAAATACTCGACAAGTCCAAGCAAGCTTATAATGATACAGAACAGGCGATGGGTGCACAGAAAAAGACAACTGACGGAATCGAGGAATTACTGAGGAAACTCAACAGAACCATAGACCTGCACGAGCAGGCGGCAAGCGCTGCTGAAAAGTCACGTGTTGACGCCCAGAATGCAATGGATGAGGCTATGGAGCTGTTCGAGAACGGAACTGTACCGCTTCCTGATTTGGGCCTGTCGGAGATGCAAGCAAAACTTAACACATCAAAACAAGAGGTTGCCAACGCGTCCAAGAGTGCCGAAGACATCCTTAATGTCCTGGAAACCTTAGTCAAGAGCTTTGACATGAAAGAAGAATACGTCAGAAAGAAAATGGCTGAGTGGCCAGGCCTGATTGAGAGACTAGAGGGCCTGTTAACAAATGTCACCAACGCTAACGAAACTGCGCACGACGCCATCGCTCGAGGAGAGGAGACACTGAGAAAGGCCAAAGACATGTTGGAGAGACTAAAGAAATTCAACGAAATTATCGACAGCTCTGGAACAGAGGCTGAGCAAGCTGAGGCTAATATAACGGAGATAGAGCGACTTATCAGTTCAGCGAATAACAAGTCAGATGAAGCCACTGCTAACTTGGGAGACGCTCAAGAGCTGGCTAAGGACGCGGCGGCGATGGCTGAAGAGGCACGTAAAACGGCTAACGGCACACAGCAGAAAGCTGAAATGATAAAGAAAGAAGCAGAAGAACTTCAAATCCCTAAAGACAATGTGACCGAACCAGTATCGGAAGCCGCAAGCCAGTTGTCTGACTACAAATCAGTGGCTGAAGGACAGAGGCAAAGCATTGAAGACGCACTCAACAAAACCAAGAGCGCAGGCGATGCTGCAGAGAAAGCGCGCGAAAAAATAGCAAACGTGCTCGAAAAACTGCTGGCGCTGTTGAAAGAGATTGATGGCGTGGGCACCGTAAACATGTCAAGGTTGAATAATATTGAGGGACAGCTCGAAAACGAGACAGATACAGTCCGCCAATTGGATCGCGAAGTTTTAGCAGTGGAGCAGCAGAGTGAAGTGATCAAGAAAAGCATCAAGAAATACACCATTGATTTGGGGAAATATCGTGCTGAAAAGAAACTGTTGCAAGAAATGTATGAGAAACTGCCCAAGATATGCCCACGATTGACACCGCCACCAGAGACTTAA

Transcript

BRAKERLUST00000016982

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P02468	Laminin subunit gamma-1 OS=Mus musculus OX=10090 GN=Lamc1 PE=1 SV=2
P11047	Laminin subunit gamma-1 OS=Homo sapiens OX=9606 GN=LAMC1 PE=1 SV=3
Q1LVF0	Laminin subunit gamma-1 OS=Danio rerio OX=7955 GN=lamc1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001810 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00052 all species →	Laminin_B	Laminin B (Domain IV)	Domain	Interproscan
PF00055 all species →	Laminin_N	Laminin N-terminal (Domain VI)	Domain	Interproscan
PF00053 all species →	Laminin_EGF	Laminin EGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002049 all species →	Domain	Laminin-type EGF domain	Interproscan
IPR000034 all species →	Domain	Laminin IV	Interproscan
IPR008211 all species →	Domain	Laminin, N-terminal	Interproscan
IPR050440 all species →	Family	Laminin/Netrin Extracellular Matrix	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10574 all species →	NETRIN/LAMININ-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0009887 all species →	Biological Process	animal organ morphogenesis	Interproscan
GO:0009888 all species →	Biological Process	tissue development	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05635	LAMC1; laminin, gamma 1	-	Prion disease	ko05020	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.