Detailed information of BRAKERLUSP00000017749.1 in Blastomussa wellsi

Genomic Location: chr3:11475897...11479121
NR annotation: XP_020626848.1, brain-specific homeobox protein homolog [Orbicella faveolata]
Species Blastomussa wellsi · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9Y2V3Retinal homeobox protein Rx OS=Homo sapiens OX=9606 GN=RAX PE=1 SV=2
Q9NZR4Visual system homeobox 1 OS=Homo sapiens OX=9606 GN=VSX1 PE=1 SV=2
O42358Retinal homeobox protein Rx3 OS=Danio rerio OX=7955 GN=rx3 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0009322 (this species only) · gene tree & orthology
Transcription factor familyHomeobox · all TF in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00046
all species →		HomeodomainHomeodomainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001356
all species →		DomainHomeobox domainInterproscan
IPR009057
all species →		Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR017970
all species →		Conserved_siteHomeobox, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45793
all species →		HOMEOBOX PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0000981
all species →		Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0000978
all species →		Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for BRAKERLUSP00000017749.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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