Gene detail

Detailed information of BRAKERLUSP00000017867.1 in Blastomussa wellsi

Genomic Location: not available for this species
NR annotation: XP_020612319.1, uncharacterized protein LOC110050735 [Orbicella faveolata]
Species Blastomussa wellsi · all data for this species · gene families

Sequence

CDS

BRAKERLUST00000017867

ATGGCAATGCTTACCGCTGCCAGCGCTGCGTCAAGCTTGTGGCCGATATGCTACAACCATCTCGAGAAGCGAGCTGATTTCAAATGTTTCGATTGTAAATATGAGAATGTGATACACCTTTGTTCTCAGTGTAACATTCAAGTTCATAGTCTTGACCTCTTCAGAGCTCACAGAATTGAGCAACTAGAACTGAAGGGTAGAGAAAGAAGACTCTCTCAAGATGTCAGCGACATTGAAAAGCTCATAGAGGTTGAGAGAGAATTACTATCAAATGTCTTAACGAAGATAAGATATACTGAGCAAGAAGAGAAGGAAACTCTTAGCCAGTTAATTCACCTTCAGACTGCAACAAAAAAGAGAATGTCTGAAATTAAAGATTGCGAAGCAACGGTTGAGAAAGCTCTCAACTATCTGATTAAGGTTTCCACCATGGTCAACCAGTGCAGCATCCCAGCTGAGGGCAATGACAGCCAGTGCAGCATCCCAGCTGAGGGCAATGACAGCCAGTGCAGTGCCCCAGCTGAAGGCAGTGACAGCGAAGCTGTTAAAGATCCAACTGCGGAAAGCATTGTGGAAAAGCCAAGTGTTCCTGCGCTGGGTCCCTCTGATCAGCCCTGTGAGAAGATTTCACAGGAGCATCCATTGGGGGAACTTGACGACTGCAAAGCTCCCCAAGAGGAACCTCTTATTAAATTAAATCTCCCTGATGAACTGAAAGAAAAAGAGGTGTTTCCTGTTTGTGTTACGGGTTCATTGACCAGAACTGGGTCCTTTTGGATTGCAAAGATAGGtgaagaagaagaggagaagCAGAGGCAAATTGAGGCTGTCATCAGAAATCATTATGTCAATATTGGTGGGTTTGGTAACCCTGTTGTTGCAAAAGAAGGAGTATTTTGTGCAGCCTTCCACAGGAAGGCCAAAAAATTATGCAGAGCCAGGGTTGAACAGGTTACCAATTCAGGCATGATAAGGCTCCGTTTCTTGGACTTGGGGATTGTTGAGGAAGTCTCGCAATCAAGTCTCTGTCAGTTGCCAACAGATGTTGTGGATGCTTCATTTCAGGCATTGGAGTGCTGTTTGCTTGCTGATCCAGACATGCAGCTTCCATACGAGGCAAAATGGTGCTTTAAGGATTTGACCTTTAACAAGGTTTTGATGGCTGCAGTGGAACGCCAGGTCACCAACAAAAATGGCCATATTTTGCATCATGTGTTGTTGGGTTCATGTGGTGAGAATCCAGTCTGTATCAACAGCCAAGTTTCCAAGCTAGTGGATGTTCAAAAGGTGGCATCAGAGGACCGCCCTCTTCAGCCTAAGGCTGACAGGACAGAAATTGCGGAAGTTGGTGCGAGTGGAGATGATTCTTTCCAATCTCAGATTTCGGAAACAACTCAAGAGGCTGTCCCAACGGTGGACGACACCAAGGGCAGTGCACCTGATGAAGAGGAGGCAATGGCAAAGACTGAAACTGAGATAAAAAGTGATGAAGTGTATGAGGTTGCAGTCAATAAAGATGAAATTGTTGGCAGTGTCAAGGCGAATGATGGTCCAAGCGAAGACAAGCCAGTTCTTCGTGCTGAAGCAGCAGTATTTGTTCCACTTTCTCCCGAGAGTGACTCACTCTCGAAAGAGATTCCTCTTCAAACCGACCTTGTGCAAAGCTCTGTTCCTGGGATTCTTCACATCCCTGTGCAAGGTACACCAGACACCGCTGTGCCAGCACCTGCACTTGAGCACTTTAACAATGCAATGCCTGTTGGTAGTGTGGATTTTGAAACATACAACCACATCCTCACCAAATGTTCATTGAATATGATCTGCAAGGAAGATTTACCCACTGCACGATTTTTGATGATCAGATCTGATGTCAAACGAATAATAGAAGCTATGAAGTTTGATGTGTGGTGTTCCTCAATCTATGGcaacaaaaaattaaatcgTGTTTTCTACGAGGCTGTTAACATAGACAGGGCTCGTGTTTTCCTGTTCTTCTCAGGAACACGAAGCTCTTTATTTTGTGGAATGGCCGAGATGGTTTCACTTGTTGATGCTAACAAATCGTGCCCAATGTTGAATGATCCATTCAAATTTGGTGGCAAGATGATTGGGCGATGTGATATAAAGTGGATCTACGCGTCTAACCTCCACTTCGGAGATGTGATGTGGCGTGATTGTGGTTTCTCCAGAAGGTATCTTGAGGAAGCTGGTGACTGCTATGAAATTGCCAATAAACTTGGACAGATCATTATAAAGGGTTTTGACTCAAGTGGCAATTTTCAGTCAATTTTACAACAAGCGTTGAAATCGTACCAGTTTTATCTCTCTGATCAACAACAAGATGAGCACAGCTTTGATGTGAAGCCCTCGTGGAGTACTCCAGAACCCAGTGATGGATTGCCAGCATCCCAGGAGGATTGGGATCTTGAAGCAAGTATTTAG

Transcript

BRAKERLUST00000017867

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9VBZ5	YTH domain-containing family protein OS=Drosophila melanogaster OX=7227 GN=Ythdf PE=1 SV=1
E7F1H9	YTH domain-containing family protein 2 OS=Danio rerio OX=7955 GN=ythdf2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006299 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00567 all species →	TUDOR	Tudor domain	Domain	Interproscan
PF04146 all species →	YTH	YT521-B-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002999 all species →	Domain	Tudor domain	Interproscan
IPR007275 all species →	Domain	YTH domain	Interproscan
IPR035437 all species →	Homologous_superfamily	SNase-like, OB-fold superfamily	Interproscan
IPR045168 all species →	Family	YTH domain containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12357 all species →	YTH YT521-B HOMOLOGY DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15046	IVNS1ABP, NS1BP; influenza virus NS1A-binding protein	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.