Gene detail

Detailed information of BRAKERLUSP00000018354.1 in Blastomussa wellsi

Genomic Location: chr4:26808144...26826781
NR annotation: XP_022796563.1, trafficking protein particle complex subunit 10-like [Stylophora pistillata]
Species Blastomussa wellsi · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERLUST00000018354

ATGGACTTAAAACCAAAAGTAACTTGTTATGGTGATAAAGAAGTTTATAATAAACTTAATCCCGAACTTGAGAAGAGACTGCCAACGGAATACACAGAATGGAGAAGATCTTTTGGAAGACCCCCTAAGACTGTCAAGTTGAAAGCAAACTTTGTGCGTCTTTCAGAGGGCATGCTCCTGGATGTCAGCAATATTGAAACATACACAACCGCGTCAAGTCTTCACAAACAACCGTTCTTTCATATTTACTGGACTGACTGCCAGGATGCAGATGAGTTCAAAAGTACGGTGAAGGACAGCATCACAGACTGGATGAAAAAGTTACGTGAAAGGAACATTGTCGACTGGATAATTATTCAGGTCATATCACAGGACTCACTGAAGGGAAATAAGCCAAAAATACAGCTTCCCCGCAGCACTGTATTCGATAAAATCAAGAGTGACTTTGGTGGCAAAAATAGTGATAGGATAGTACAGTTATGGGAACCCTTCAAAGAAAACCAATTAACTCGATCTGTAGAATCATGGCAGAACTTGGTCACAAAACTGCGTCAGTTGTTGTTAGTCTCCTTTAATCGTCACTTGGGGAAGTTTGAAGACCAGGTCCGGTCACTGAGGGAAAAACGAACTGAGCCAAGATGGAGTTTTAccacatattttttgctgcATGAAGAATTGTCATTTGTATTTGAAATGCTTGGTCTGTTTGAAGAAGCTCTTATTCAATATGATGAAATTGATGCTCTACTCACTCAGTTGGTTATCAACTCTAAATTTGGAGAATCCTTAGACTGCATCAATGTCTTTATGCGAGATTGTAAATGCTTTGATGGAGTTTCATTAGCCAAGAGTTCTCAAGATTTTTTACAGCAGTTAATCAAAACACAAGAAGCAAGCTACATTGACCTGAGAAATTATCTTTTTTCTCGGCAATGCAAACTTTTGTTGAAATTGGACCGTCGCCGTGCGTGGGAAATTGCTCAACGAACACTGGACTTTCTTCATAATATTATACATGAGTTGGCAATGGATAAGCTTGAGATGTCGATGCTCACTGGTGGAGCATCATGTTGTATCATCTTAACAAGCTTGGAAGTGTTTAAAGCCTGCAAGGATGAATGCCATGAGGAGGATATTGTATACAGTCTGCACTTTGCTCTTCTCTACCAGTATGCTCGGCAAAAGTTGGATGACTTGGGGTCCCTATGTGCCCTGATGCCTGATATGATGCAAACGGAGACCGAACTTCAGATTGTCAAGACTCTGATTTCTGGGATTGGACAAACACAAGACACAGtTGATCTTGAGCCCAGCAGCCCATCAGTGAGACTTAAGGAAGCTCTCTCGAGTAGAGATAAATTTCAATCATTGTACTTGGAATTAACAGACTCGGCAATTCAAATCTTCAAGAACATTGGACGAGCTAGAGCAGCCAAAGTGCTCGGGGTGGATCTAGCGCAATTTTACTTTTCCCGAGGAGAGTTTGATCGGGCAGAGCCGCTGCTTGTAGATGCATATAAGATGTATAAACACGAGAGGTGGAGTCTTCTAGCAACACAGTGTTTGGTCAAACTGGCGCAGTGTCAAAAGCAAGTCAAACACATGGACAAATATGCCGCTTCCTGCTCAATTTTGGCCTGTGAGAAGAGTCTTTCTCCTGAAAACAGGTCTCATTACACTCAGGAGCTGTTACAAGTCATGCGGGAGACAATGGATTCAGCTCGAGCTATCATTGTACGCGGTGAACCACTGCTGCGAGTGGAAGATGTTCAGATTGAGCTGATGAAAGGCATCGGAAGTGTTGGAGAGTGTATTAATGTAAAACTGAAGCTCTTTAGCGCTTTGGAAGAGGAAGTGACTTGTGGACGGATCAGTTTTAGCATTCAGACCAATGAGCTTAAACGTGCGGCGAGCATTTGTTCAAGTAAAAGAAACCAAGCTGCGTCTCCGCCAGTTGTTGTGGAGAGCAGCCTTTCATCCGCTGCACTTTCTGAGGAAGACCTGTCAGATAAGCCTGTCGCAGAGCGCCAAGCGGCAGAGGAGAAAGGTGACCCTAATGGCGATATAGTGGAAAGACCTCACCCACCCCTCCTTAAACCGCAGTCGCTGCCAGTGGTGAAGAGTATTGAAGAGTTGAACGTGATAGATGAAGATGATTCAGACTGCTGTCTGCAGTGCGTTAACGTTCCACTCAGACACGGTATCAATGAGTACAACCTCACTACACAGTTATCCGAACCAGGACATTACAATCTGAAACAGCTGTGTGTTGAGATTGGTAGGCTGGATTTTGTGTGGCCACAGCTGTCCTTGTCGAGGCAGTCCAGGGGATTTGCGATTGTCAACGATCCACCATTTATAAAGTGGACTCATGCACAAGAGCTCCATCTATTATCAGGCCTCCCACAACGGGTCACTCTTAGCATTTCAGTGGAATCTGGATCCATTGCAGACGGCTCAGTGCTGGAAATCACTTGCCAGAACACAAGTGTCACATTTGAAGCCATCCAGTCAGGTGAAGCAGTCGTACATTCCTCAATGGGCAAAGAAGATAGCAAGACTTTACCCTACAAAGTTCAAGTTCTAACCATGTACGGACATGATGACGTCACCGATACttctgttgctatggtaaccctACCGGCCGTTGGACCTTATGCTAAGATCGATTTCGATCTGATTCTTCATGCTTCTTTGGAGAAGCAGAGTATCCAAGAAGAAGCAGCGGAATATAAGCTCATGTTTAGTTGTAAGTGGTTGTCCCCAGTGGTTACCGCTGACCTGTTCTGTTCATTTCACCGTCCGTTTTCCGTTCGTCATGTGCTGCACTCCTCTGAAACCAACCGTTTTGTACAGGTGATCGTGACTGGAATTAACCCAATTGACCTGATAATCTCCTCTCCTGAGTTGATCATCACAAACTGCTCTTCAGTTAAGCTCGTACCGATCCACACTGCTGCAGAATACGTGATTATTAATCATCAAGATGTCTCCTTCCTATGGAAAATCGAGAGTGAACAAGGTTCACCTACTGAACTCAATTGCAAGTTCAAGACTTCATTTTCACCTAAACTCAATGAGGATGATTCACTTTCTTCATCTGAGAAGAGTAATTGCCTGTACGACTTTAGTGTGATTAATTCTCAGACGCTGTACACCATAAGTTCAAGAGTCGAGCCTTCAGAGGAATCCGGAGGGCTGCACGCAGGTTCGACTTGCAAGTGGCACATTACCTTCACATGTTTATCTGAAGAAAGAACGCCGGACACCTCACAACTCTTATACGACGTCGACTCAGATACAAACACGTGGGCTGTCAGTGGTCGCAAACGCGGTGTGGTGACGATCCCACAGGGTGCCATGGCAACTAGTGACATTGTTCTTAATGTGATACCGCAAACTGGCGGGAACTTAGCAATGCCTGGGATAAAATTGATGAAATACGTCGAAAAAGACGAGAAGCCGCAGTCCAAGGAAGACGAAGGCGCGGAAATAAGCACGGCTGAGTCGCGGTCAAGTCACCAGTCCCCTCTCGTTTTACCGTTTGCGTGCGGTCAGGTTTATAACAAGACGGTAGCGGTCCGCGTTTGCGTTTTGCCAAGCAATAACCCTGACCTTGCTTGGATATGA

Transcript

BRAKERLUST00000018354

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P48553	Trafficking protein particle complex subunit 10 OS=Homo sapiens OX=9606 GN=TRAPPC10 PE=1 SV=2
Q3TLI0	Trafficking protein particle complex subunit 10 OS=Mus musculus OX=10090 GN=Trappc10 PE=1 SV=3
Q9VFB7	Trafficking protein particle complex subunit 10 OS=Drosophila melanogaster OX=7227 GN=SIDL PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003343 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11817 all species →	Foie-gras_1	Foie gras liver health family 1	Repeat	Interproscan
PF12584 all species →	TRAPPC10	Trafficking protein particle complex subunit 10, TRAPPC10	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021773 all species →	Domain	Trafficking protein particle complex subunit 11	Interproscan
IPR022233 all species →	Domain	TRAPP II complex TRAPPC10, C-terminal	Interproscan
IPR045126 all species →	Family	Trafficking protein particle complex subunit TRAPPC10/Trs130	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13251 all species →	EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1/TMEM1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006891 all species →	Biological Process	intra-Golgi vesicle-mediated transport	Interproscan
GO:0034498 all species →	Biological Process	early endosome to Golgi transport	Interproscan
GO:0048193 all species →	Biological Process	Golgi vesicle transport	Interproscan
GO:1990071 all species →	Cellular Component	TRAPPII protein complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20307	TRAPPC10, TRS130; trafficking protein particle complex subunit 10	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Blastomussa wellsi tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Blastomussa wellsi, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →