Gene detail

Detailed information of BRAKERLUSP00000018466.1 in Blastomussa wellsi

Genomic Location: not available for this species
NR annotation: XP_020623364.1, structural maintenance of chromosomes protein 6-like isoform X1 [Orbicella faveolata]
Species Blastomussa wellsi · all data for this species · gene families

Sequence

CDS

BRAKERLUST00000018466

ATGCTTTCTTTTTACCAGGAGCCTGAATTGCCAGGAATAATTGAAAATGTTACGCTAGTAAATTTTCTATGCCATGATCACCTTTCTGTTACCTTTGGATCACGTGTCAACTTCATTACTGGAAGGAATGGAAGTGGAAAGAGTGCAATTATGACAGGTCTTGTTGTGGCACTGGGTGGAAGAGCTGCTCAAACAAGCCGAGGATTGAGCGTGAAAAACTTTGTAAAGAAAGGATGCAGTTCTGGCCATGTCTCAGTTCAGCTACGAAACAGAGGATCTGATGCATTTAAACACCATCATTATGGAGATTCCTTGACCattgaaagaaaaatatctGCAGATGGTGGGTCATCATATAAGATCAAATCCGTTGAAGGAAAAGTAGTTTCAATGCAGAAGACTCAAGTAGATGAAATTGTGGATCACTTTAACATTCAGGTTGACAACCCAGTTTCTCTGCTAAACCAAGACACAAGTAGGCATTTACTTCAAAGCAATGATGAATCAGATCTTTATAAGTTCTTTATGAAAGCAACCAGCCTTGAACAAATTAGCAGTGATTACTGTTTTGTGATGGAGCAGAAGGAAATTGCTTTGGACACTTTACAAAGAAAAGATCAGGTTATTCCAGAAATACGAGAGCAGGTGCGCGGACTAGAAGCAAGGTATATTGCCATCAAACAAATACGAGACATCAAAGAGCAGATTGAGGAACTCAAAAGGGAGCGTGTTTGGGCTGAAGTTATTGAGCACGAAAAGAAGGTTGCTAAGCAAGCTACAATTGTAGAGAAACTCAAGTCTGGCCTCCCAAAGTTTGACAAGGAGATTCAAGAATGTGAGGTAATTTACCACTATGTAACTGCAATAAAAGGTTTGATCCCAGGAGCAGTAGTTGCCTTAACTGAATATGAACATGTGGATGAGGATAGTCCTGAAAGAAGGCTGTTGTTGATGGCTAAGGTTTCAAAAGACTCAGTAAATGTAATCTTTGGAGTGAAACGAAAAGATAAACTGTCAGACTTTGAACAGCAAATGAAAGCAGTGGAGAGTGAGATGAATCAATTCGTAGATGACGCAAACTCCTTGAAGAATTTACAACAGCGAATTGTGACAGAAATTcaagaaaggaaaaagaaagtcaAAGACAAACAGTCCACTGTGAGGAGACTACAACATGCCATCCAAGAAGCCAATAATGACAAAAATgttcttcaagaaaagatagagGAGATAAGAACCTCTGTAGAGATGAGAAATTGTGAAGAAGAGCGACTTCAAACAGAACAGTTAGCACAACAGAAAGGAAAGAAATTGGAAGAATACAACAGCAGTCTTCAGGAGCTTATGGTGAAATCTGCTAAACTACGTGATGAAGTGGACAGGGAGAGAGAACATGTCAGCAGATTATGTTCCAGTGAAGAAGACCTACAAAACGATATCCACAGAATAGAAAAACGAGTGCAACAAGCGAAGTTGCGATCTGACAACAGGCTCATGATGTTCGGCAACTGGATGCCAAGTTTACTGAATAAAATTAGCATAGCTGTAAAGGAGAAAAGATTTACCAAGCCACCCAGAGGCCCCATTGGTATGTATGTTCATCTGAAAGATCAGAAGTGGTCAAGGGCAATAGAGTCATGCCTTAAAAAGTTTGGCTATGGATTCTGTGTTGTAAACTTTAAAGACTTGAAAGTTCTCAAGTCTATGATAAACCAGACTTGTACAAACTTCTCCCCTGTTGTGGTGATGTGCCCCTTTGAGGAAACTGTTCACGATGTGTTATCACATAAACCCAGATGCGAGTTTCCAACAATTTTTGACATGCTGGAATTCAAGGATACAGTAATAGCAAATTGTCTTATAGACCAGCTTCATATAGAAACGACACTGCTAATTGAAAATAGATCACATGCTGCAGATGTTATTTGGTCAAGGAATGCACCAGCCAAGCAGGCCTTCACTTTAGGTGGTGATCAGATTATTGGCAGGCCGTGTGTAAAATCACTTGCCCCTTCACAAGAGTGGAGAAATTACTTAACATCAACTAGCACTGCAGATAATATTGGCGCCCTAAATAAACAAATTGGTGACAAGAAAAAGCAGTGTAATCAACTTGCTGCAGAGAAGAAAGTCATCGAAAATTCTGTGAAACAAAAAATCGAAATAGCTGAGCTGATGGACAGCTTAGAAGAAGTGGTTTCTCCTGACATCACAGAATTGGAATCTGACTTAGAGCAGTGCACCCAAAGGCTTGAGGATCTCAATGAGCAGAGCCAGCATGCACAACATGAATTGCTTCAGGAGACCGCAAGCATGGAAGATCAACATAGAAAGAGTGAAGATCACAAGAGCAGGATTGGTCAAGTGTTGGAAAAAGCAGAGCCTCTCAAAGAAGAGTTGGAGTCATTAACAATGCGGAATGGCGAGGAGAAAGCCAAATTGCAGCACTATGAAAGAGAACGCAGGAAATTAGAGCAGAAAATTGAGGAGAACAAAAAGGAACAGGATCGGCTCATCACGTTAGCGGAACAAAAGGCAGAAGTGGCATCCCGCCACTTTGAAAGAATAGAGACAACGAGAAGTGTAAAGGATCTCGAGACGGAGATtttgaaaaaacagaaacatgctcaggaagaagaaaagaatCGTGGAAATGTGGAAGAAGTGATCAAAGAATATAAAGAAACTCAGGAGAAATTCGCGGAGATATTACAGAATAACAGTAACATTAAGAAATACAACAAGAAACTTCATGTTGCAATGGAGATACGACAGAAGTATTtcaaaaagaagagaaagatCTTGGCGTCAAATACTTCCCAGTTTTTTACAAACCACTTGAGCCAAAAGGGTTTCAGTGGATACATATCGTTTGATCACAGCGAAGAAACCCTCAAACTCATCGTCAATGTTCACAAAGATCCAAAACAGGAGTATTCTGAGAAGGATGTTGACGAAAGCACGTCTGTCATGAAGTGTCTGTCAGGCGGTGAACGATCGGTCTCCACCGTGTCTTTTCTGACAGCATTGTGGGGCACCATGGAGTCTCCCTTTAGATGTCTTGATGAGTTTGATGTTTTTATGGGTGAAAAAGGTGAGAGGGGCTCGCCAGGAAAAGACGGGATATCCCAACATGGTGCGATCAAGTTCGGCGACACCGCTGATACCTGCACGCCCGGTACCGCAGGCACGGTTCGCTTCAGCACTTCCCGGAATGCTTTGCAACTCTGTGACGGCAGCGCTTGGTTGTCAGTGGTTACTTCTGGTAAAGGTCACGTAGCCTATAACCCAGGCCGTCACTGCTTGGACATTTTAAATTCAGGTCAGAGTCGCGGCAGCGGACTCTACTGGATAGATCCAAATGGTGCCTCAACAGGTGACTCGTTCCAAGCTTTCTGTGACATGGAGACTCAGCGAGGAGGTTGGACCCTTGTTGCCACAAAAATCTCTCCGAGTTTCCTCTTCATCAAAACTGTATTTTCGACATCGGCTGCAAAAACTACCCATGCGGATGCCGCGAGTCATATCCATCCTGACATGGGGGACTGGGAGGAAGTCATGTTCCGCTTTGGTGACACCAATACCATCCGGGTTATTTACAGTAGGAAGGCTGGCGCACCACAAAACGACAAAACAGAGTTCGAGAAGTTTCTAATGGGGACATCTCTTAAGCTGGTAAAGAACGTGTACGGGTTTTATAAGTACAACCCAGCAGATCACAACAAACGAAGTCCTGCTGTGGGTTATGCCACAATATCCACTCTGTACTTCTATTCAAACTCTGGGATTACAGAAGGCCACGGTGGCACTGACAAGTGGCTTGACATATGGAGCAGTGCTGACGGTTCAGGAAACAACTACATCACTTCCGACGACAACAGGGCACTTGGTACCAAGTGTATCGCGGGCTACTGCTACCTGAACAAACCAATATGGGTAATGGTGCGATAG

Transcript

BRAKERLUST00000018466

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P9I7	Structural maintenance of chromosomes protein 6 OS=Xenopus laevis OX=8355 GN=smc6 PE=2 SV=1
Q924W5	Structural maintenance of chromosomes protein 6 OS=Mus musculus OX=10090 GN=Smc6 PE=1 SV=1
Q802R8	Structural maintenance of chromosomes protein 6 OS=Takifugu rubripes OX=31033 GN=smc6 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001806 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13476 all species →	AAA_23	AAA domain	Domain	Interproscan
PF01410 all species →	COLFI	Fibrillar collagen C-terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR002181 all species →	Domain	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Interproscan
IPR038729 all species →	Domain	Rad50/SbcC-type AAA domain	Interproscan
IPR000885 all species →	Domain	Fibrillar collagen, C-terminal	Interproscan
IPR036056 all species →	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19306 all species →	STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005201 all species →	Molecular Function	extracellular matrix structural constituent	Interproscan
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0003684 all species →	Molecular Function	damaged DNA binding	Interproscan
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0030915 all species →	Cellular Component	Smc5-Smc6 complex	Interproscan
GO:0035861 all species →	Cellular Component	site of double-strand break	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERLUSP00000018466.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.