Detailed information of BRAKERLUSP00000018675.1 in Blastomussa wellsi

Genomic Location: chr4:22710845...22719626
NR annotation: XP_027052538.1, centrosomal protein of 57 kDa-like [Pocillopora damicornis]
Species Blastomussa wellsi · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8CEE0Centrosomal protein of 57 kDa OS=Mus musculus OX=10090 GN=Cep57 PE=1 SV=2
Q86XR8Centrosomal protein of 57 kDa OS=Homo sapiens OX=9606 GN=CEP57 PE=1 SV=2
Q865V0Centrosomal protein of 57 kDa OS=Bos taurus OX=9913 GN=CEP57 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006097 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14073
all species →
Cep57_CLDCentrosome localisation domain of Cep57Coiled-coilInterproscan
PF06657
all species →
Cep57_MT_bdCentrosome microtubule-binding domain of Cep57DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR025913
all species →
DomainCep57 centrosome localisation domainInterproscan
IPR024957
all species →
DomainCep57 centrosome microtubule-binding domainInterproscan
IPR051756
all species →
FamilyCentrosomal microtubule-associated proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19336
all species →
UNCHARACTERIZED DUF1167Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0042802
all species →
Molecular Functionidentical protein bindingInterproscan
GO:0043015
all species →
Molecular Functiongamma-tubulin bindingInterproscan
GO:0008017
all species →
Molecular Functionmicrotubule bindingInterproscan
GO:0005813
all species →
Cellular ComponentcentrosomeInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K16762CEP57; centrosomal protein CEP57-Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Blastomussa wellsi tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Blastomussa wellsi, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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