Detailed information of BRAKERLUSP00000019143.1 in Blastomussa wellsi

Genomic Location: chr4:21713017...21714663
NR annotation: XP_020623357.1, frizzled-4-like [Orbicella faveolata]
Species Blastomussa wellsi · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9IA05Frizzled-4 OS=Gallus gallus OX=9031 GN=FZD4 PE=1 SV=1
Q9ULV1Frizzled-4 OS=Homo sapiens OX=9606 GN=FZD4 PE=1 SV=2
Q61088Frizzled-4 OS=Mus musculus OX=10090 GN=Fzd4 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000357 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01534
all species →
FrizzledFrizzled/Smoothened family membrane regionFamilyInterproscan
PF01392
all species →
FzFz domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000539
all species →
DomainFrizzled/Smoothened, 7TMInterproscan
IPR036790
all species →
Homologous_superfamilyFrizzled cysteine-rich domain superfamilyInterproscan
IPR017981
all species →
DomainGPCR, family 2-like, 7TMInterproscan
IPR020067
all species →
DomainFrizzled domainInterproscan
IPR015526
all species →
FamilyFrizzled/secreted frizzled-related proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11309
all species →
FRIZZLEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0007166
all species →
Biological Processcell surface receptor signaling pathwayInterproscan
GO:0016020
all species →
Cellular ComponentmembraneInterproscan
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0004888
all species →
Molecular Functiontransmembrane signaling receptor activityInterproscan
GO:0005886
all species →
Cellular Componentplasma membraneInterproscan
GO:0016021
all species →
Cellular ComponentmembraneInterproscan
GO:0017147
all species →
Molecular FunctionWnt-protein bindingInterproscan
GO:0035567
all species →
Biological Processnon-canonical Wnt signaling pathwayInterproscan
GO:0042813
all species →
Molecular FunctionWnt receptor activityInterproscan
GO:0060070
all species →
Biological Processcanonical Wnt signaling pathwayInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for BRAKERLUSP00000019143.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Blastomussa wellsi tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Blastomussa wellsi, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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