Gene detail

Detailed information of BRAKERLUSP00000020212.1 in Blastomussa wellsi

Genomic Location: not available for this species
NR annotation: CAH3121469.1, unnamed protein product [Pocillopora meandrina]
Species Blastomussa wellsi · all data for this species · gene families

Sequence

CDS

BRAKERLUST00000020212

ATGGAAAGCCCGCCAACGAAAACCGCGCTTAATCTCGAAGACAGTGGCTGTGTTGTCGATGGATTTCGAATTGCTCTCAGCGATGGTGATGTCGAGGATGAAAATTCAATGATGCTTGATCATTTGGAGATGTCCGGCACGAACGAGTCTAAGTCCAGTTTGAAGGATGACAGCCCAGTGCAGGAGAAGAAAGTATTCCATGATCTTGTAGCCAAATGGGAAGAGTCACCAGAATGGAACAAGTTTCATGAGCTTTGGGAACGACATAGCTTTTCTATCATCCTTTTGTGCGTAACAGTACTCTTGCTAGCGTACAGCATTGCAGCAATTGCCGTGAGTGGGTTTGACAAGGCGAAATGGCTTTTTGCCATTACAATGTTTCTGTGGTTCTGCATGACATACATGTTCATCCGTAATCATTGTGGAGCTGATATCTACCGAGTTATTTTGAGGCCAGTTGTTGAAGTGATAAACAGTAAATGGCAATATCTGAGGTGGGTTTTGCTTGTCCTTGTTTTGGTGGCTCTAGGAATATTTTTTGGACTAGACACAGCTAAAGAACCAAAGCGTTTTATCTCCGTTGCTGGATTATTTTTGAACATACTCTTTTGCTGGGTTTTTTCCAGACACCGCAGAAAGGTCAAATGGCGCCCTGTCATCTGGGGTCTTGCCTTACAGTTTGTGTTTGGCCTTCTTATTTTACGAACCAAAATTGGTTTTCAAGCTTTCAAGGCACTTGGTGATCAGGTGTCTGCATTTCTTGAATACACCAGCAAAGGAGCAGAGTTTGTATTTGGAAAAGACTACCAAgaacatttctttgctttcaagGTTCTCCCCATCATCATTTTCTTCAGTTCTGTCATCTCCCTCTGTTACTATGTTGGTGTGATGCAGCTTGTGATCAAAAAGATTGCATGGCTTATGCAGATTACCATGAAGACCAGTGGTGTAGAGAGTTTGAATGCTGCTGGTAACATCTTCATTGGACAGACTGAGGCTCCACTCATGGTAAGACCATTTCTTGAACATGTGACAATGTCGGAACTTCATGCAATAATGACCGGAGGATTTGCCACCATTGCCGGGAGCGTGTTAGCAGCTTATATTGAGTTTGGGGTGTCGGCTTCCCATTTGTTGAGTGCATCTGTGATGTCTGCACCAGCAGCACTTGCTATTTCCAAGCTTATGTACCCTGAGACAGAAATACCAGAGACTTTGAATGAGGCAGACATCAACCTGCCAAAAGGCAATGAACGAAACATAATTGAAGCAGCTGCCAAAGGCGCCAGTACAGCCATTGCATTAGTTGCTAACATTGCAGCTAATTTGATTGCCTTCCTTGCATTCCTTGCATTTTTCAATGGAGTATTATCATGGCTTGGATCCATGGTTGGCCATCCAGAATTCAGTTTTGAGTTTATTTGCTCATACGTCCTGCGACCTGTTGCTTTTATGTTGGGAGTTCAGTGGGATGACTGTGATGTTGTAGCTGAACTGTTGGGCATCAAGACATTCCTAAATGAATTTGTGGCATATGCAGAACTTTCTAAGTATATCgaaaacagggaaaaagaaaatggcttACGAACCATATCGATTCGCTCAGAGATTATTACCACATATGCGTTGTGTGGCTTTGCCAACTTCAGCTCGATCGGCATTCAAATCGGAGGCCTGTCTCCTCTAGCGCCATCAAGAAGACAAGACATGGCTACTGTTGCATTGCGTGCACTGGTTGCGGGTACAATTGCCTGCTTCATGACAGCGTGTATTGCAGAGAACGTTTGCGATGTTGTGCACATTGCATCCGAGTGTTGCGTGGTGTATGACAGCATCAGTGCGCAAACGTTCTGCGTGAACCTCAGCTTGTCGGCAGTTGCAAAAGCAGAGCTCAAAATCGCGTTTGTTTGGTTCCCTATGGCAACCAAACGAATTACCAGCCGTAGACACGCCATGATTGTTATGTGGCTTTGTGCCAGTTTGGCCGTGGTCCTTAATCTTATAGTACCAGCTGCTACGTACGACAACGAAACGTCTTCACTGGATATATCTCTCGTTATTGACCAGACAAGAAGCGTAGGAGCGAAGAACTATGATTCCATGTTGGACTCCATTATGGATCTTATTTCCAAGTATGATATTGGCGAAAACAAAACTCGCGTTTCAATCGTCACTTACTCCGGTAGCGCGCAGATTCGCGCAGCTCTTGACGACCCAAAATACCACAGCCGAGAGAAATTGCGTCAACTCATCCAGGAAATGAAAGATACTGACAAACTGACAAGTCCCACAAGGACTGATAGAGCACTGAAAAAGGTTTGCGAGAAGGTTTTCGGCCCAACGGGTGGGGATCGTCCAGGATCACCAAATATCTTGGTCATTTTCACTGATGGGGCTACGCATAAGAACTCTGAGCCGTATGATGCCGTGCTGCCGAACTGTGAGGTAAACCAAGTGCATCGTGTGGCCGTAGGTATTGGAAAAGACATAAGCGAGTCAGAACTCGAGATTATTGCTGGACATAAGGACCGAGTGATAGCTGCTGACAGTTTTGGGGACCTAGTTAACAAGCTGGACAGAATTCGAGAAGTTGCTAACAGTAAGATTATTCTCCTTGTGTTTTATGAAAGATACATGCCAGGAAATGTTTAG

Transcript

BRAKERLUST00000020212

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UA35	Solute carrier family 28 member 3 OS=Eptatretus stoutii OX=7765 GN=SLC28A3 PE=2 SV=1
Q9ERH8	Solute carrier family 28 member 3 OS=Mus musculus OX=10090 GN=Slc28a3 PE=2 SV=1
Q8VIH3	Solute carrier family 28 member 3 OS=Rattus norvegicus OX=10116 GN=Slc28a3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001071 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07670 all species →	Gate	Nucleoside recognition	Domain	Interproscan
PF00092 all species →	VWA	von Willebrand factor type A domain	Domain	Interproscan
PF07662 all species →	Nucleos_tra2_C	Na+ dependent nucleoside transporter C-terminus	Family	Interproscan
PF01773 all species →	Nucleos_tra2_N	Na+ dependent nucleoside transporter N-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008276 all species →	Family	Concentrative nucleoside transporter	Interproscan
IPR011642 all species →	Domain	Nucleoside transporter/FeoB GTPase, Gate domain	Interproscan
IPR002035 all species →	Domain	von Willebrand factor, type A	Interproscan
IPR011657 all species →	Domain	Concentrative nucleoside transporter C-terminal domain	Interproscan
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR002668 all species →	Domain	Concentrative nucleoside transporter N-terminal domain	Interproscan
IPR018270 all species →	Family	Concentrative nucleoside transporter, metazoan/bacterial	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10590 all species →	SODIUM/NUCLEOSIDE COTRANSPORTER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005337 all species →	Molecular Function	nucleoside transmembrane transporter activity	Interproscan
GO:0005415 all species →	Molecular Function	nucleoside:sodium symporter activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0015293 all species →	Molecular Function	symporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:1901642 all species →	Biological Process	nucleoside transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERLUSP00000020212.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.