Gene detail

Detailed information of BRAKERLUSP00000020707.1 in Blastomussa wellsi

Genomic Location: not available for this species
NR annotation: CAH3035245.1, unnamed protein product [Pocillopora meandrina]
Species Blastomussa wellsi · all data for this species · gene families

Sequence

CDS

BRAKERLUST00000020707

ATGATGCAATCAGTGCATCTCGTTGGTGAGGATGAGGACGACCTCTACGGTGGTTTCAACGACTACAATCCTGTTTTTGACACAGAGAATCTTGAGGAAGATGAAGAGTTGCAGCAAGCTCTAAAAACAAGTCATGGACAAAGGCCTGGTGTAAAAACCGGTATGAAGATAACCTCAGCTGGGCGAGGCAAAGTACCAGGATCTTCAATGGGGCGACCTACAACTGGAATTGCCgATACCGGGATGGCTCGTCCAATGACTGCAGTACGTGCAGTGGGTTACACGTCATCAGAAAGATCACCCATGAGTAGTGGTGGCCAGTTTGACCCCTTTAACCAGGCACGTTTACCTGCCCCTCCCCTTGAGGGAAAGGGTGAGGAAAGTCCAGAGGAAAAAGTCAAGCAAATGGAAAAGAAAGTAAATGAACTGATTGAAGAAAGCTGTTTTGCTAATGACAGAGGGGAGTTTCCATTGGCTTTACAGAAAGCCAAAGATGCAGGTCGCAAAGAACGTGCTTTGTGTCGACAGAGGGAGCAGTCAGCCCATCAAGACCAGATTAACCTTGATTTAACTTACTCTGTGCTGTTCAATTTGTCTAACCAGTACCATGCAAACAAAATGTACGCTGAGGCATTGAACACATACCAGGTTATTGTCAAAAACAAGATGTTTAGCAATGCAGGACGGTTGAGAGTGAATATGGGAAATATTTACTTTGAGCAGAAGAAATATCCTCAGGCAATAAAGCAGTACAGAATGGCCTTAGATCAGGTGCCCAACACACACAAGGACATGAGGATAAAAATTATGCAGAATATTGGTGTGGCATTTGTCAAGATCACACAGTTTTCTGATGCTGTCACCTCATTTGAGCATATCATGTCTGAGAAGGCAAGTTTTCAAACAGGTTTCAACTTGCTTTTGTGCTATTATGCTTTGGGAGacaaagagaaaatgaaaaagaCATTTCAAAAGTTGTTAACAGTTAGCCTTGGCTTTGATGACGAGGACAAGTACACTTTGACTGGGGATGATCCCCAGCAAGCACTGATTCTGGAAGTCATTAGAAATGACAAACTTAGACAAATTGAACGACAAAAGAAATCCCAAGCAGATAAATGCATTATGGGTGCTGCTAAGCTCATATCTCCTACAATTGAGAGTAGTTTTGCAGCAGGATTTGACTGGTGTATAGATTGTGTGAAGGCATCACCTTACTTGGAATTGGCCAACGAGCTGGAGATAACAAAGGCAATTACTTATCTTAAAGAGAAGGATCTTGCTAAGGCTATTGAATCCCTTAAAGGTTTTGAGAAAAAGGACTCCAAAGTTCAATCTACTGCAGCCACTAATTTGTCATTTCTGTACTTTCTGGAAAATGAAGTGTCACAGGCTGATAAGTATGCAGAACTTGCAATAACAGCTGATCGTTATAACCCCGCAGCACTTGTGAACAAGGGGAACTGTTTGTTTGCTAATGGAGATTATGAGAAGGCAAGAGAATATTATCAGGAAGCATATAATGTGGAGGCTTCCTGTACTGAAGCATTGTTCAATCTAGGTCTTGCAGAGAAGAAGTTAAATCGACCAGAGATTGCTCTGGACTGTTTCTATAAACTACAAGCAATCCTCAAGAATCACCCTCAAGTTCTTTATCAGATTGCAAGCATACATGAAGCATTAGATGATAAAGCACAAGCTATTGAATGGTATATGCAGCTTGTTTCAGTGGTACCTACTGACCCATCAGTGCTGTCAAAACTCGGTGAACTGTATGACAGTGAAGAAGACAAGTCACAGGCATTCCAATATCACTTTGAGTCCTACAGATACTTTCCGTCTAATATTGACATCATCTCATGGCTTGGGGCTTACTACATTGATTCCCAGTTTTGTGAAAAAGCAATACATTACTTTGAAAAAGCTTCAGTTATACAGCCGAATGAAGTTAAATGGCAACTTATGATAGCAAGTTGTTATAGAAGAAGTGGTAACTATCAGCAAGCTCTGGAAACATACAAGAACATACATAAAAGATTCCCTGATAATGTGGAATGTCTTAAATTCTTGGTAAGAATTTGCACAGATCTTGGACTAAAAGATGTTCAAGACTATGCTCAGAAGCTAAAGAAggcagaaaaggcaagagaGTTGAAACAACAGCGAGCCAACAGTGGGTCCAGGAAAGGTAGTGGAAGAGCAGGAAGTGCTAACATGCCTGGCACTGCTGGATCCCGCGACAGCAGTGCAGGAAGTGAGTCAGGCCGTGTGGACAGTGGTGGCAACAGGAGAAGTGCAAACCGTTCTGCTGGACGAGCTAAACCGATCATTCCAGATAATGACGATTCATTTGCCTTTGGAGGAGCAAAGGAAGTTGATGCCACATATGCAGACCCCCTGGGAGAAGCTCCTGCTAGGCCCAAGACTGCTGGTAGGCAGCGGCCACAACAAGTCGAGGACGAATTTGGCGATGAAGAGATTGGGGATGACCTTCTCccggaataa

Transcript

BRAKERLUST00000020707

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q61371	Intraflagellar transport protein 88 homolog OS=Mus musculus OX=10090 GN=Ift88 PE=1 SV=2
Q13099	Intraflagellar transport protein 88 homolog OS=Homo sapiens OX=9606 GN=IFT88 PE=1 SV=3
A0A644F649	Intraflagellar transport protein 88 OS=Giardia intestinalis (strain ATCC 50803 / WB clone C6) OX=184922 GN=GL50803_0016660 PE=4 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004816 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF07719 all species →	TPR_2	Tetratricopeptide repeat	Repeat	Interproscan
PF13174 all species →	TPR_6	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR013105 all species →	Repeat	Tetratricopeptide repeat 2	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44117 all species →	INTRAFLAGELLAR TRANSPORT PROTEIN 88 HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005814 all species →	Cellular Component	centriole	Interproscan
GO:0019894 all species →	Molecular Function	kinesin binding	Interproscan
GO:0036064 all species →	Cellular Component	ciliary basal body	Interproscan
GO:0042073 all species →	Biological Process	intraciliary transport	Interproscan
GO:0097546 all species →	Cellular Component	ciliary base	Interproscan
GO:0097730 all species →	Cellular Component	non-motile cilium	Interproscan
GO:1905515 all species →	Biological Process	non-motile cilium assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16474	IFT88; intraflagellar transport protein 88	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.