Genomic Location: chr5:7812309...7820195
NR annotation: CAH3044617.1, unnamed protein product [Pocillopora meandrina]
Species Blastomussa wellsi · all data for this species · gene families
| CDS |
| BRAKERLUST00000021423 |
| Transcript |
| BRAKERLUST00000021423 |
| Protein |
| BRAKERLUSP00000021423.1 |
| UniProt accession | Description |
|---|---|
| Q640B4 | Structure-specific endonuclease subunit MUS81 OS=Xenopus tropicalis OX=8364 GN=mus81 PE=2 SV=1 |
| Q7SXA9 | Structure-specific endonuclease subunit MUS81 OS=Danio rerio OX=7955 GN=mus81 PE=1 SV=1 |
| Q96NY9 | Structure-specific endonuclease subunit MUS81 OS=Homo sapiens OX=9606 GN=MUS81 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003511 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF21136 all species → | MUS81-like_WH | Crossover junction endonuclease MUS81-like, winged helix domain | Domain | Interproscan |
| PF02732 all species → | ERCC4 | ERCC4 domain | Domain | Interproscan |
| PF21292 all species → | EME1-MUS81_C | EME1/MUS81, C-terminal | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR011335 all species → | Homologous_superfamily | Restriction endonuclease type II-like | Interproscan |
| IPR047417 all species → | Domain | MUS81, winged helix domain | Interproscan |
| IPR047416 all species → | Domain | MUS81, XPF-like nuclease domain | Interproscan |
| IPR042530 all species → | Homologous_superfamily | EME1/EME2, C-terminal domain | Interproscan |
| IPR033309 all species → | Family | Crossover junction endonuclease Mus81 | Interproscan |
| IPR006166 all species → | Domain | ERCC4 domain | Interproscan |
| IPR036388 all species → | Homologous_superfamily | Winged helix-like DNA-binding domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13451 all species → | CLASS II CROSSOVER JUNCTION ENDONUCLEASE MUS81 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000712 all species → | Biological Process | resolution of meiotic recombination intermediates | Interproscan |
| GO:0000727 all species → | Biological Process | double-strand break repair via break-induced replication | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0006302 all species → | Biological Process | double-strand break repair | Interproscan |
| GO:0006308 all species → | Biological Process | DNA catabolic process | Interproscan |
| GO:0008821 all species → | Molecular Function | crossover junction DNA endonuclease activity | Interproscan |
| GO:0031573 all species → | Biological Process | mitotic intra-S DNA damage checkpoint signaling | Interproscan |
| GO:0048257 all species → | Molecular Function | 3'-flap endonuclease activity | Interproscan |
| GO:0048476 all species → | Cellular Component | Holliday junction resolvase complex | Interproscan |
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0004518 all species → | Molecular Function | nuclease activity | Interproscan |
BRAKERLUSP00000021423.1.Genes whose expression across the transcriptome samples of Blastomussa wellsi tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Blastomussa wellsi, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
