Gene detail

Detailed information of BRAKERLUSP00000021571.1 in Blastomussa wellsi

Genomic Location: chr5:4123136...4134071
NR annotation: XP_020618826.1, LOW QUALITY PROTEIN: endoribonuclease Dicer-like [Orbicella faveolata]
Species Blastomussa wellsi · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERLUST00000021571

ATGGAGGAAAGAAAAAGGGCCAAGGAATTGTCCTTTCAGCGGCCGCATCATGCAGTGGACTTGGTTGAACGAGCAATGGAGGTCGATGGCGCGAGTGTCATTTGCGTTGCGATAAAGGAGTCCAAGACTTTCATAGCATTTAAGGTGTTCCAAGAGTTTTGGAGAAGAAAGCTAAAACCTACAAAAATGATTCTTTTGGTAGATGATGAAAAAGccaAAATTGTGAAGCCATTCATGAACGGAGCAACTAACCAGAGTATGTTTTCAGTGAAAACATGTTTTGATGAGACAAATAATATCACAGATAAAAGAGATTGTGAACAATACAATTATGACATTGTGATTATAACAGGAAAAGTTTTCCTGCAGATTTTAACAGCTGGAATAATGGATTTGACATTCCTCAGTTTAATTGTCTTTGACAAGTGTCATCTTGCTGTCGACAAGGAGCATCCATTTGCAGTCATATTAAAGAAAATTGAAGGATGTGATCTCGATTTAAGACCTCAAATAGTTGGCCTTACATCAGAGATTCTTCTGCATCAAGCCTGTCCACAAGATATGGAAACGTTCCTTATTTCCCTCGAACAGTTATTTCACTGCAAAGCACTTATTTCCAGTGACCTACTGGCTATGAATAGATATGGAGAACAAGCCGATGAAGAAATAAGTTGTTTTACTTGCAACCATGTTCAGGATGAACTCATCTGCCATCTCAATGGAATCATTCAAAGTGCTGTTTTATTTCTTAAAGAATACAGAGTGTGTAAAGAAACACAGACATGTGTGAAGTTTGTCAAACATATTTTGGTGGAGAGCCATAAAGTTCTTTTATGGTTAGGACAATGGTGCACTGCTTCTGTAGCAAGAATTGTTATAAAAGAGATcaataaaattgaaaagaagTGCAATGAAGACAACAATGTTTTCCTGTTGCAGTTTTGCAGAACACAGATGGATTTAATCATTAACATGTCAGGGCAAGAGAGATTGGAGGGCCCTGACAATAACCTTACCGATCTTGCTACAAAATTGCTTTTTCTCATGACCTCACATTTAAAGCTTGAAGATCACAAGGTTGATAGCCATCCTGCAATCTCCTCAAACTCTGCTCAACCTTGTCAAGTTCCGTCTCAATCCGGAAGCTTTAAATCTTTGTATGGTACTAAAAACCAGTGTGACGACCCTTTGTGTGTAGTGCTTGTCCCTAGCACAATTATTGCTAAGGCACTGAACTCACTCATCAACAAGCTGTCAAAAACCGTCCATGAGTACAGCTTCCTTAGAAGTGCATGTGTCCATGGAGACAAAGCAAATCAAGGAATATTAGAGAAAAGTTTCTCTGGTGAAACAGAGGACAATGTTATGGAGTGTGTGCAGGATGGCTCTGTGAATGTTCTTGTTGCGACATTTGAAATTGAACAGGAGTTGTATGCACGGAGATGCAGTCTTTTAATACGCCTGGGTATGCCAAAAGTCTATGAGAATTATCTCAGGGTAAAAAGTAAACTTAAGTCTGCTGGAGCCAAGCTGGTGGTTCTTGTGAAAGAGGACGAAATTGCCAATGCTGAAGAGAGTTACAAGGTGTTCCAGAGGATAGAGACGCTCTTGAAAGAGAGGTGTTCTAATAGCCGGCCACCATGCCATGAAGTAAAGAAACTATTCCAAGACGATGCCATAGATGTTTATGAACCTTATGGTGAAGGAGGCCCTAGAGTTGATCTTCTTTCTAGTATTTCTATTGTCAACAgTTATTGCTCCAAGTTTCCCAGTAGTGGAGTCGGTGCTCCCGTTCTTGTCTGTAGAAGAAAGGAATTGTGGTCTGATGATGAAGTGGAGTTTGTATCTATACTTTACCTTCCTCGAAACTCTCCAATTCACCAACCTATCAAGGGTAGTGTAACACTGAAGAGAAGCAAAGTTAATGACTGGTCAGCAAGAAAGGCTGGAATCAAGTCTGACATGGTTGCAGCTCTTGAGACCTGTCGGGTGTTACACAAGGAAGGAGAACTGAATGGTGAGCTTCAGCCAGTGTACAGATTCAGTGTTCCCCGTCTGACAGCAGAAGGTGAAGTATGTGAATGTGAGGTTGCAGACAGTGGCATTGGAATGGATGGCTCAGTAAAGAGAAACAGAGCGTACAAGAAAAAGTTTCCTTCAATATTGGAGAACAATTTCCCAGTTTGTGGAGAGCCAAGCTATGTGTATTGCGTTACTATGGAGCTAACGAAACCATGGACGTTTGAACGGGCCGTCAGATCACAGAGTAAAGTTCCATCGGCATCAGTTGCTCATTGTCTTGGCATTCTCTCTAGAAAACGCCTGCCTAAGCTGCCTGGCATGCTGATATTTGACAGAGGTGGAGAAGTCACTGCAACTGTTGCAGAGTGCAGTGAACATCCCGTCGTCCTAACTTCTTATGAAGTGTCACTCCTGCAGAGATTCACCGGGTATGTCTTCAGGGAAattgcaaaaccaaagcaacaTTCCTCAGCAACGTTTCCGTCATTTGACCCATCCATTGCATCGTCTGGTTATTACATTTTGCTTCTTAAGGATGCCCCGGAGAAACGGAAGGAAATTGCATTTGACTTCATGCACTCCATTGAGGATTCACTTGGCAGCTTCGACAATCCCACTGACCCACCCCCTCCCGGTATCGAGGACCCGGAGATCTTTAGGGATACAGTTGTTACAGCCATTTACAACGAGAAACGTACCCATTACTACGTGGCTGACATATGCTACGATCGAAGCCCCGCAGATCCGTTCCCAAACTCCGAACTAGCCAGTAGTTTTGCCGAGTACTATGAAAACCGGTACGAAGTCGAGGTATCATTGGATCAACCCATGCTGGATGTTGATCGCACATCTTCTCGACTTAATTTCCTAACACCCCGCTATCAGAACATCAGAGGCCAACATCTTCCTGTACCTGAGAAAGATTCCAGGCGATCGCAGAAATCCACGGTCTTTGTGATTCCTGAGCTGTGCTCCATTCATCCAGTGCCGGGATATCTGTGGAGACAGTTGTTCCTTTTACCTGCTGTGTTGTATCGCTTCGAGTCTCTCCTGGTGGCAGAGGAGCTAAGGTCCCATGTGGCCTGCGTTCTTGGCATGGGAGCTGTTGATTGGCCTAGTGATGTTCCTATACCACATTTGACAATTGGGGAAATGGTTGGAGAGGAGATTGAGTGTAAAACAGTTTCTGCTGCAGAGGAATCAAGTGCCAATTCTTCCAAGATGACTGCACAGACGCTCAACAGTCTGCACTGCACAGAGCTGTCTGCAGCTTTAACAGATCTGCAAATTTCCAGACAGGAAAACAACGATGCGATGTACCCTGCAGGTAACCCATCCTTACAAAATTCTGATGCTCATGCCACTACTGACTCTTTGTCAAAGCTCGTATGCGACAAAACTCTTTTTGAAGGTTCGTTTATTGAATCTAACACCAAAACAGTTTCCCATAATTTAAGCGAAACGAAGGTGGAGTCCTCTCAAAGGGATCTCTCAGACAGAAATGCTTCTGTTTCGTTAGACGAAGGAACATCCCCAAGTGGCAAGAGTAAACATGCGCTTGAGGTGGAAAGCGAATTGTCGCCCTTCACCATTTGGACTGACCCTCTTATTTCCAGCTTGTACCAAACCTGTGGGCCACCATCAACCTTGATTCTTCGTGCTCTCACCACGGGCATGGCTGGAGACGTATTTTCTCTGGAGCGTCTTGAGATCCTAGGCGATTCATTCTTAAAGCATGCGATCACGTCGTCAATCTTCTTCAAATACAGTTACGAGAATGAGGGAAAGCTGTCTTTCATGCGCGGTCTCCAAGTGAGCAACCGGCAGTTGTTTTATCTTGCACGGCAGCGTGGCTTGCCTTCTTATGTGATTACTCGCATGCTCAACCCTTTGGTAAATTGGCTGCCTCCTGGATTCTATCACAAAAATTGTGATGACGCTGAGGGATTGGGAGATGGAAATCTTCTCTTAATGCCAGATAAAGGACTTCAAGAGTTtgacgatgaagaagaagaTGGAAGTATTTTTGCAAGTGTAGAAATTTCAGACCCTAGTGTTGGACCTGATAGTCAAGGGCTCCCTGGAGAGGACCACTCAACTGACACCCACCTGAGCCACTACGTGCATCTCTGTTGTTCAGATAAAGTCATTGCCGACGTCACTGAGGCACTAGTTGGGGCATACCTGTTGTGCCTTGGCCCGGAAGGAGCCTTCAAGTTTCTGGAATGGTTGGGTGTTGAATTAACGAAACAAGAAGATACTCAAGATGAATATAATGCGAGTAGGTCCCCTGCTGAGGATTGTGCTCTTGGTAGAGTTCACTTGGAAACAGAATCATCCACGAACAGTCAGGACTATTCGAAAGTACCTTTGCAAGCTTGTCAAATAGAGAAGGAGATAGCCACCCCAAATCCTTCCATTAATGGGTCCTTATCAAGGGAAATGACTACAGCTGCCGCGTTCAATCCTCTCGAGGAGGCTCTGAACTACCGCTTTCGTGACTTGTCTTTGTTGCTACAAGCGTTCACACACACCTCCCTGCCACGTGACTACAACTCTGTACGAAGCAGCTATGAACAATTGGAGCTCCTAGGGGATGCTCTCTTGGACTTTCTTGTGACGCGTCATTTGTATATATACCACAGACACATGACCCCTGGCGAGCTGACAGACCTGCGATCTGCTGTGGTGAACAACTACAGTTTCGCCGCTCTGGCTGTCCAACTGGGATTTCCCAAACACCTGAGCTCGTTATCACCTCAACTTTTTCGTACGGTGAACAAGTTTGTAGTCAAGCTGAAGGAGAAAGCGATAAAACAGCAACAAGTGGAGAGCGGTGAGGTAcagtaa

Transcript

BRAKERLUST00000021571

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B3DLA6	Endoribonuclease Dicer OS=Xenopus tropicalis OX=8364 GN=dicer1 PE=2 SV=2
A0A8J1LLF7	Endoribonuclease Dicer-S OS=Xenopus laevis OX=8355 GN=dicer1.S PE=3 SV=1
Q8R418	Endoribonuclease Dicer OS=Mus musculus OX=10090 GN=Dicer1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001051 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02170 all species →	PAZ	PAZ domain	Domain	Interproscan
PF20931 all species →	Dicer_platform	Dicer, platform domain	Domain	Interproscan
PF00636 all species →	Ribonuclease_3	Ribonuclease III domain	Family	Interproscan
PF03368 all species →	Dicer_dimer	Dicer dimerisation domain	Domain	Interproscan
PF20930 all species →	Dicer_PBD	Dicer, partner-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003100 all species →	Domain	PAZ domain	Interproscan
IPR036389 all species →	Homologous_superfamily	Ribonuclease III, endonuclease domain superfamily	Interproscan
IPR000999 all species →	Domain	Ribonuclease III domain	Interproscan
IPR048512 all species →	Domain	Dicer, platform domain	Interproscan
IPR038248 all species →	Homologous_superfamily	Dicer dimerisation domain superfamily	Interproscan
IPR005034 all species →	Domain	Dicer dimerisation domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR048513 all species →	Domain	Dicer, partner-binding domain	Interproscan
IPR036085 all species →	Homologous_superfamily	PAZ domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14950 all species →	DICER-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004525 all species →	Molecular Function	ribonuclease III activity	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0016891 all species →	Molecular Function	RNA endonuclease activity, producing 5'-phosphomonoesters	Interproscan
GO:0004530 all species →	Molecular Function	deoxyribonuclease I activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006309 all species →	Biological Process	apoptotic DNA fragmentation	Interproscan
GO:0016442 all species →	Cellular Component	RISC complex	Interproscan
GO:0030422 all species →	Biological Process	siRNA processing	Interproscan
GO:0031054 all species →	Biological Process	pre-miRNA processing	Interproscan
GO:0090501 all species →	Biological Process	obsolete RNA phosphodiester bond hydrolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERLUSP00000021571.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.