Gene detail

Detailed information of BRAKERLUSP00000022266.1 in Blastomussa wellsi

Genomic Location: :...
NR annotation: XP_020628480.1, probable ATP-dependent RNA helicase DDX60 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERLUST00000022266

ATGTCTTCAGTGGCAGATCTAATGGACGGGCGTCTTGTCTATGCGCTCTTCAGCCTTGCCTTGGAAGAAAGGTCTAATGGACTGGAAGGCCTCAACGGTTTACCAGAAGATTTGATCAAAGAAACAGAGGATGCCTGGAGTAAAGTTGTTGCTATTGTGAATAACGTACATCCTTCGGATTCTCGTCGATCTCAATTTTTTCCCTTGTTTAAAGAGAACGTGACGGGTGCTCAAAGCTTTCAAGAACGTCGTTCTGAGCCGGACTCTTGCTTGAAAGTCAGGCGTCTCCTTGAAGTCGAAAGTGTCCTTGTGAATGAGTATGCTGGAGACATTCGGACAAAAATTAACGCCACGGCTGGAGATGAGAATGAAGAAGTTTTCAACATTGGCCGGGACTTTGATGAACGTTATCACTGGCATTCTCTCAAGCCTCTTTCTGATGATTACGAACGAACAAATCAAACGTTCACAGATAAGCCTCCAGACGACCCGTGGCAAAGAAAACGGTATTTCAAAGAAAAGCAGAAATACGTTCGCTATCATAGATTTTATGGCAACTCACTTGTTGGAGGCATTGACCAGGCGAAGATTATCACGAGCAAGAAGAAGGCACAAATTattgaagaaaataaacaaaggagTAAAGAGCtagacaagaaaaaagatttaGAAAAGTGGCGTCATTTTCTTAAGGACATCAAAAGCAGCTTGAAGGATGGCAACTACGATACAGCTTTAAAGTCGATTAATAAATACGAATCAGATTGCAAATCTCCAGAACTTCATCTTAAAGCGCTCATGAAAAGAGCGGAGAGTAGCTACGAAGCCTGGCGACATACAAGAACATGTGACCCAAGTTGTAATGATATGAAGTATCCTGTCCTTTTAATGCAAAGTGTCCAGAAAATTGCACAAGGCTTCCAAAGTCTGCTTAGcgacagaaagaaaaacaaactcGCTGGATACATGCAAAAGCTGGGCTTCAGTGACATCGCAGGCTCGTTTTATGAGTTGCAACCCGAAAATGGAGAAAGGGCGGGACAGCTTTCTGTTCACACTACAAGCGTACGATTTCAGCTGGAGCACATGGGACATTTGCTTAAACGAGACGAGCGCACGGATCGTGATCCTAGAGTGGAACACTTTATTCCAGACACATGGCAGCGTGAGCTCCTTGATGCTGTGGATAAGAACGAGTCAGCGGTGATCGTGGCACCAACCTCATCTGGAAAGACATATGCCTCTTACTACTGCATGGAGAAAGTGCTGAGACAAAGCAACGATGGTGTAGTGGTTTATGTTTCACCAACAAAAGCTTTAGTGAATCAAGTTGTTGCCACAATCTACGCTCGTTTTCACCGCAAACAGCTCCCAGAAGGACGGGCAGTGTATGGTGTCTTTACCAGGGATTATCGATTCAATACATTAAACTCGCAGATCCTTGTTACAGTTCCTCAGTGTTTAGAGATACTTTTTCTCTCGCCTCGTAGACAGGACTGGACAAAGAATATCAAATACGTGATCTTCGATGAGGTTCACTGCCTTGGACAAGAGATTGGGGCGGAAGTCTGGGAACATCTCCTTCTTCTGATTCGCTGTCCTTTTTTGGCTCTCTCGGCAACCATTGGAAATCCACACGACTTAATGGCCTGGTTGCAAGCTGCTCAAGACTTTCGTGAGCAGCAGGATAAACAAGATAAAGGCAAGCTGAGGGACTCATACCGGATCAGGCTAGTTACCTGTGACGAGCGATACTCAGATCTGGAAAAGAGCATGTACCTTCCAAGTCCTTGTCACGGCGGATTTTCTGAGGAAACGGAGAGATACGAAGGTAGCTACGATGTTAAAAACACAGAGGAGTTTGTAAGACTTCATCCATGTGCCCAGCTTGGACCCAAACAGCTACAGGAAAATGGTTTTCCAGGTGATATGGCTCTCACTCCCAAAGAGACCCTTCACCTTTTTGACACAATGGTTCAACAGTGGCCCGACAAAGAATCCTTGCAGAAACTTTCTCCAGAacaatatttccgtgaaaacaCGTTCATTCTAAAGAGTCATGCTCGACAATACGAGCACGAAATAAAGAAGGAATTCAAGTCCTGGGCCGATCAGAAACAGTTAAATAAgGTGGAATCCGTCATTCAGTCATTGAATGCTATTTGCGTAGACAAGCAGGCCTCAGTTGAACGAGAATGGAGCGAAATAGGAATGCCTTCGTCTGGTCCACTTTTCATCTTAAATAATTTCACGAAGCTGGTTGACCAACTCAGAGCACAAGATAAACTGCCAGCCCTGGTTTTCAGCTTTGACCGCATGCTGTGCGAAGAACTATCGGAGTGTCTTACTGAGGACTTTGAAGATCGAGAAGAAAATCTTCGAGCTCAAGGGGACCCAAAAACCTTAAAACTGGTAGAGAAGAGGCGagaaaaggctgaaaagaaGTTGAAAAAGACAAGAGATCAAACAGATAAAGAGAAAGGAAATAGGTATTTTAAACAGTTTTACCTATGTTTATGA

Transcript

BRAKERLUST00000022266

Protein

Uniprot

Uniprot term	Description
Q8IY21	Probable ATP-dependent RNA helicase DDX60 OS=Homo sapiens OX=9606 GN=DDX60 PE=1 SV=3
Q5H9U9	Probable ATP-dependent RNA helicase DDX60-like OS=Homo sapiens OX=9606 GN=DDX60L PE=1 SV=3
Q09475	Uncharacterized helicase C28H8.3 OS=Caenorhabditis elegans OX=6239 GN=C28H8.3 PE=3 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR052431	Family	SKI2 subfamily ATP-dependent RNA helicases	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44533	DEAD/H RNA HELICASE, PUTATIVE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan