Detailed information of BRAKERLUSP00000023505.1 in Blastomussa wellsi

Genomic Location: chr5:21623129...21630509
NR annotation: KAJ7374450.1, hypothetical protein OS493_007556 [Desmophyllum pertusum]
Species Blastomussa wellsi · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9UBX3Mitochondrial dicarboxylate carrier OS=Homo sapiens OX=9606 GN=SLC25A10 PE=1 SV=2
O89035Mitochondrial dicarboxylate carrier OS=Rattus norvegicus OX=10116 GN=Slc25a10 PE=2 SV=1
Q9QZD8Mitochondrial dicarboxylate carrier OS=Mus musculus OX=10090 GN=Slc25a10 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001412 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00153
all species →
Mito_carrMitochondrial carrier proteinRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR018108
all species →
RepeatMitochondrial substrate/solute carrierInterproscan
IPR023395
all species →
Homologous_superfamilyMitochondrial carrier domain superfamilyInterproscan
IPR050391
all species →
FamilyMitochondrial Metabolite TransporterInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45618
all species →
MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0008272
all species →
Biological Processobsolete sulfate transportInterproscan
GO:0015116
all species →
Molecular Functionsulfate transmembrane transporter activityInterproscan
GO:0015117
all species →
Molecular Functionthiosulfate transmembrane transporter activityInterproscan
GO:0015131
all species →
Molecular Functionoxaloacetate transmembrane transporter activityInterproscan
GO:0015140
all species →
Molecular Functionmalate transmembrane transporter activityInterproscan
GO:0015141
all species →
Molecular Functionsuccinate transmembrane transporter activityInterproscan
GO:0015297
all species →
Molecular Functionantiporter activityInterproscan
GO:0015709
all species →
Biological Processthiosulfate transportInterproscan
GO:0015729
all species →
Biological Processoxaloacetate transportInterproscan
GO:0022857
all species →
Molecular Functiontransmembrane transporter activityInterproscan
GO:0035435
all species →
Biological Processphosphate ion transmembrane transportInterproscan
GO:0071422
all species →
Biological Processsuccinate transmembrane transportInterproscan
GO:0071423
all species →
Biological Processmalate transmembrane transportInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K15106SLC25A14_30; solute carrier family 25 (mitochondrial carrier), member 14/30-Transportersko02000deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Blastomussa wellsi tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Blastomussa wellsi, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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