Gene detail

Detailed information of BRAKERLUSP00000023638.1 in Blastomussa wellsi

Genomic Location: chr5:20918792...20947518
NR annotation: XP_022803287.1, E3 ubiquitin-protein ligase HECTD1-like isoform X2 [Stylophora pistillata]
Species Blastomussa wellsi · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERLUST00000023638

ATGGTAGACGTCGATCCCGATACTCTCTTAGAATGGCTAAGTATGGGACAAGGAGACGAAAGGGACATGCAACTCATCGCTTTGGAGCAATTGTGTATGTTGCTGCTGATGTCCGACAACATCGACCGGTGTTTCGAAAGTTGTCCACCACGGACATTCCTACCAGCCTTATGTCGGATCTTCTTGGATGAGTGCGCACCTGAAAATGTACTTGAAGTAACTGCAAGAGCCATTACATACTACCTTGATGTGTCAGCGGAATGCACTCGACGGATTGTGGCTGTGGAAGGGGCCATCAAGGCCCTTTGTAGTCGGCTGGTGGTTGTTGATTTATCTTCAAGGACAAGTAAAGACTTAGGAGAGCAATGTGTTAAAGTCCTGGAACTGATATGTACTAGAGAAGCAGGGGCTGTGTTTGAAGCAGGCGGCCTTCAATGTTCATTAACATTCATCCGTGAGTTTGGGAGTTCTGTGCATAAGGATACTCTTCATTCTTCAATGAATGTTGTAACTAGATTGTGTGGAAGAATGGAGCCACAGGATACCAACTTGGAAACCTGCGTCAAATCACTGTCAACATTACTAAAGCATGAAGATCCTTACGTATCTGATGGTGCTCTTCGGTGCTTTGCATCCCTTGCTGACCGGTTCACCCGCCGTGGTGTTGATCCTGCCCCCTTAGCTGAACATGGACTGAGTAGTGAGTTGTTAGAGAGGCTTGCAAGTGCCGCAGCTTCTGCTGGAGAGAAAACAGGAAGCAGTGGAGCTACGCCAGACTCAAAGAACAACAGCACATCAGTGTCTACTATTGTTAGTCTGTTATCGACACTGTGCAGAGGATCACCCAGTGTTACTCACGACTTGTTAAGAGCTGGTCTTCCAGATGCAATCCAGAAAGCACTCCAAGGTGACGAGAGATGTGTTCTAGACACCATGAGGCTGGTAGATCTGCTCTTGGTTCTGTTGTTTGAAGGACGACGAGCCTTGCCCAAGTCTTGTGTCAGTATTCCCAAGGGAGGAATTTCTGTTCTTCGAAGGTTTGACAGTTCAAATGAGAGGTCACACAGACAGCTTATTGACTGCATTAGAAGCAAGGATACAGATGCGGTGATAGATGCCATTGAAAATGGTGGATTTGAAGTAAATTTTATGGATGATGTTGGACAAACATTGCTGAACTGGGCATCTGCATTCGGAACATTAGAAATGGTGGAATATCTTTGTGAGCGAGGAGCAGATGTTAATAGGGGTCAAAGGTCATCATCTCTACATTATGCTGCTTGCTTTGGAAGACCTGCTGTTGCAAAAACTTTGCTTCGGCATGGTGCCAACCCAGATTTAAGAGATGAAGATGGTAAAACTCCAATGGACAAAGCCAGAGAGCGAAATGATGAAGGTCACCGAGAAGTTGTACATATCTTACAATCACCAGGGGAATGGATGGTGCCTGTGGGAAGCAGTACGTCTACTTCAACCACTACACCAGCCCAGCCAGCTGCCACTCCTGATTCCACCAGTGCCGAAGAGAAGAAAGAGGAAGCAGAGGATGTGAAGGGAGACCCTGAAATGGCCCCTGTGTATCTCAAGAATCTTCTGCCACTGTTTGCCAGGAACTACAAGGAAACGATGATGCCAAGCATCAGAAAGGCTACCTTAGCACTGATGCGTAAAATGATCCACTATGCATCTCAAGCTCAACTGGAAGAACTGTCGCAGAACTCGACATTTGCATCTGTTATTGTGGAGGTGCTCTCAGTGGTCTTGGATCATGAGGATGACGACGATGGCCATTTAACAGCTCTGCAGATCATAGAGGACTTGCTAGAGAAGTGCCAGGAGACATACATCAGTCACTTGGCTCGTCTGGGGGTCATTCGCCATGTGGCAGATCTGGCAGGACCACTGCAGGATGTGGAAACTGTACAAGAGGAACCAGAGGCCAAAGGAAATGAAGAAGAGACTGAGAAAAAGGAAGATGCTGGCGAGATAGAACAAGGCAAACCATATCACTGGCACGACTGGTGTATTGTACGCAGCAGGGACTGCCTATATCTGTGGAATGAGTCCTGTGCTTTGGAGCTTTCTAACGGCAGTAACGGTTGGTTTAGGTTCATTTTGGACGGAAAACTTGCCACAATGTACTCTAGTGGCAGCCCTGAAGGAGGATCAGACTCATCTGAGAGCAGAGGAGAATTCCTTGAAAAACTCCAAAGAGCACGCAGCCAGGTCAAGCTTGGAACTCCAAGCCAACCACTTCTGTCTTCACCTGGCTCAAGCCGACTTTCAGTGGGCAACTGGTCTCTCACATGCACCAAAGACAAAGAAGTATCTGTACACAATGCTGATGGACAGCAAGCGACCATTCTCCGTGAAGACTTAGCTGGGTTTGTCTTTGAATCAAACAGAGGGACAAAGCACACCTTCAATGCTGAAACATCCCTGGGATCGGAGTTTGCTGCTGGCTGGATGGGAAAGAGAGGGAAGCGATTTGTGTCAAAGGTCGAGGCCCAAAAACTGAAGATAAGAAACTTAGCCACTGAGATCCAGGAGAAGTATCTTCTGGCGGCACAGGCAACGCCTCGTGAAGTTGTGGCCAAGTTACAGGAAATTGTCACTCAACTACATTCAGCTTGTTTGTCTCAGGAAAATCTTACCAAGGGAGGGGAAAGCAAAGAATCTTGGAAAGAAGAAATGTTCAGTGCTTTGAAAGGCCTGCTGCAAGTACTACAAGATGACACTACTGTCTCATCATTTGAATTACAATCTACTGGACTGGTTACAGCTCTTCTACGCTGCCTACACCAGACTGGCAAAGCGATATCCTCTGACAATGAAAACACCAGCAATCGTGCAGCAGAGTGCATTGCCGAAAGAATTGAAGTCTTCAAGTCAGCTTTCGGTGAAACCGAGGAGCAGCTGAACCAGGAAAAAAGCGGTGAAGTTACTTCTGCCTCAATCCTGGTTAAGAAGCTTGTGGCTGTTTTAGAGTCAACAGAGAAGCTGCCTGTTTTCACTTACGAATGTCCTGGGTCAGGTCTTCAGGTGTTGGCAAGGCGACTAAGATTCCAGTTAGAAAGAGCTCATGGAGAGAGTTCACTGATAGATAGAACAGGAAGAACTTTGAAAATGGAGCCACTGGCCACTGTAGGAGATTTAGAACGATACCTCTTAAAAATGGTTGCTAAACAGTGGTACGACTATGAGAGGAACAGCTACCACTTCGTTCGTCTCCTCAGAGGAGGCGACAAAATCACCTTCACACACATGCAGGACTTCGACGAAAACGGTATTCTGTACTGGCTCGGAACGAATGGCAAGTCTATCTCTGATTGGGTGAACCCAGGGTCTGTGGGGATCGTATCGGTTAGCACGTCAGAAGGCAGGGGACTGCCTTATGGAAAAGTTGAAGACATCCTAAGTAGAGATGCCGCTGCACTGAACTGCCACACAAATGATGACAAaaatgCATGGTTTGCCATTGATCTGGGCGTGTGGTTTATTCCAACCTGTTACACTCTCAGACATGCTCGTGGTTATGGAAGGTCCGCTCTTCGTAATTGGCTTTTCCAAGTGAGCAAGGATGGAAAGAACTGGACTACACTGTACACACATACAGATGACAACTCTCTTAATGAACCTGGGTCCACGGCATCCTGGCCGCTTGAGCCTCCCTCCGACCAAGAGGGCTGGCGATATGTTCGTTTGCAGCAAGCTGGCAAGAATGCTAGTGGCCAAACACACTATCTGTCGCTGTCTGGGTTCGAGGTGTATGGAACAGTAATAGCAGCTGTAGAAGAACCGTTAGGCCCTGAACAGTCGCCTTCCAAGGTCGTCACTGCTGGCGACAAACTGTCCAAGTCACTGAAGCCCTGCTGGTCTTTGTGCCCGGGTAAAGCTGCACGGGAGGTGGAGGCTGCGCTGCGTCGACAGCGCCGCCTCATTCGCTCACAGATGCTGAAGCACCTGAACGTGGGCAGTAAAGTTGTCCGTGGCATGGACTGGAAGTGGAAAGACCAAGATGGAAGTCCCCCCGGGGAAGGCCTCGTCACTGGAGAACTACAGAACGGTTGGGTCGAGGTGGCATGGTCAAATGGTACCTCTAACTCCTATCGTATGGGGGCAGATGGTAAATTCGACTTGAGAGTGGTTGAGAATACTCCCTCCTCGGAATCTGCAGGAGAACCCTCTACTTCGACCCCTGGCGAAGAAGGACATTCCGAAGAGGGACCCTCGACCGAGGAGCCTGAAGTTTCCTCACCGGAAAAGCCCCAACAAGAGAGTTCCTCAACGTCCCAAACTGTTGACGTGTCCAGCGAGGTTTTAGTTGAAGCCGTCAGAGTCGAGGAGATTCCCGATGAAGGAATATTTACCTCAGATGACATTATTGACATGCCTGGGAATGCAGTGGTAGTGTCAGAGTCGTCTACTGACAGTTCGGAGCACGTGCCGAGTACTGATGAACCCAAAGAGACTGTCGGTGAAATAGAGGAGGTCacagaggaggaggaggaggaggaggaggaggtcaCTGCCACACCTAACAACACTTCCTCGGTGCCACCTACAAGTTCCAACAGTGTTTCGGTCAACATTTCTGTGGGAGAAACTGCAAGAAGGTTACTAAGCTCAGCCGTTAACGCAGCCAACTCATCAGGCAGCAGACTGTCCAGAGCTTCTGATCTGGACATGTACGTGGCCATGAGAGGCTCAGGACTGCTGACGGGACTGGAAGATGATTACGACCTTCCTGAacctgatgaagatgatgatgaggacgacgacgatgacgatgatgacgagaACGACGAAGAGAATGAGGATGATTATGAGGTTGAAGAGGAGCCCGAGTCACGTGGTGGTCGTCGGCGCACATGGGACGACGAGCACGTGCTAAAAAGACAGTTCTCGGCACTGGTGCCTGCGTTTGACCCGAGGCCAGGGAGAACTAACATTGCACAGACCCAGGACATTGTCATTCCTGCGCCAGGCTCACAAGAGAGTTCCACGTCAGAGGCGACAACAGCAACTCTGGAGCCTCGTCTTGTGTTGACTATCAAGGGACCAGCCTCGCTCGCgCAGCCAGAGGTCGAAGTTTATTTAGATGATCCCAAGGCCACCATATTCTCATATGTACAGAAGGTCGCACTGGCCGCTGGGATATCGAAGAATGAGCGAGTGAGAAGAGTCTGGGAACCAACCTACACAATCAGCTATTGTGAAGTTCATGATCCTGAGCGAACAGAAAGCCCAAATGAAACCAAGGAACACTCAGAAACAATGGTTCATTGGACCATATCATACGTGGAGCGTTATCTAGGCTCTGATGAGCTGCCAAAGTCTGAAGTGATCTCGTTCCTTCAGAGGAATGCTGATGCTGCATTCCTGCGGAAATGGAAGTTATCGGGGGTTCCTAAGAGCATACGAAAAAACAGAAACTGCTCTCAACTCGTGGCAGCCTACAAGGAATTTAGTAATACTCTCGACTCGTCTCCGCCCCCTTCTCCTCCTTCAGAAAAGCCGGAAGTCAAACAGGAGGTCAAACAGGAAGTGATAAAAGACAAGAGCTCGACTGTCCCTATCCCGGCTGTCGTTAATGACATATCCGCTATTGAGGACATTCTGCAGCTCCTAAAAGCTCTCTATAGTATATCCACTAGTTCTGCATACGACTTTGGAGATGGTAATGAGAAGTACGGATTCATCGTAGGCAATGAAGATTTTACAAGTAAAAAACTGACAACCAAACTAGTGCAACAGATACAGGATCCTCTAGTGCTGTCCAGTAATGCCTTGCCGACGTGGAGTGGACTGTTGACTAGCTCCTATCCATTCTTGTTTCCTTTTGAGACCAGACAGCTTTATTTTTCATGCACGGCTTTTGGCAGCTCAAGAGCGATTGTGTGGCTTCAAAACAAACGGGATGTAGCACTGGAGCGAAGCCGTCCTCTGAGTCACAGGCGAGAAGAACAACACGAGTTCAGAGTGGGCCGACTGAAACACGAGAGAGTCAAGGTACCACGAGGAGATGAGTTGTTAGATTGGGCAATGAACGTGCTGAAGTTCCACGCTGAACGGAAATCTGTGTTGGAGGTCGAGTTTGAGGACGAAGAGGGTACAGGGTTAGGACCATCACTTGAGTTTTACGCGCTTGTGGCGGCCGAGCTTCAACGTAAGAGCCTGGGAACGTGGATTTGTGATGACGTCATCGTGGATGAGACTGCCAGAGAGGTGGACATCGGACATGGAATTCGCCCGAGGGGCTATTACGTGCAACGCGCGGGCGGGCTGTTTCCCGCACCCCTCCCGCAGGATGGCCCTGACACGGAGAGGGTAGCAAAGCTTTTCTGTATTCTGGGTATTTTCATGGCGAAGAGCTTACAGGACAGTCGATTAGTAGACATCCCTCTGTCGCTATCGTTTCTTAAACTCTTGACCTCTAGTGCGTCATCGTCAAGCAGTAGCAGCCCACTGCCCTTCAGTCGCAGCTCGTTACAAGTAATCGATGACGCATCGTGCTCGCTCGAGGATATCGTCGAGTGCTCGGACACGACGAACGAGCTCGATCAACCCCAGCCAAGCTTAGAGGAGAACGAAAATGCGATTAATAAATTGGACTGGGAATCCAGCAAAGAAAGAGAACTTATCGAAGAAGAAGAGGAACTGTCTAAAGAAGAGAATTCTGAACTGAGTAAAACTAAAGAAAGTGTCGAAGATATGCCGCTAACGCCTTTAGCGCCATCTTGGTTTGCGGGGATTTTGGACGATAGTGATATGGAAGTCGTGGACCCGCACAGGGCGACTTTTCTGAAACAACTCCAAGAGTTGGTCGCCAGGAAAAATGACATTCTCAAAGACGATTTGCTGAcaacaaatgaaaagaaagccAGAATATCGGAGCTTAAGTTGAAAACAGCTAATGGGGTTGAATGTAGTGTTGATGATTTAGGGTTAACGTTTCAATTCTCGCCGTCTTCCAAAGTGTACGGGTTCAGTGAAGTGGATTTAACAAGGGATGGCGGAGAAAAGGTGTTAACAACAGAGAATGCCGAGGAGTACATCAAGCTAGTCAAGGAATTTTGTTTACATACCGGCATACAACGACAGTTAGATGCGTTTAGAGATGGCTTTAATTCTGTGTTTCCAATGGAGAAGCTTCGTCCATTCACTCCAGACGAGTTGCAGTTGATGTTGAGCGGAGAACAAGTTCCCCAGTGGACCCGAGAGGACATTATGAATTACACTGAACCCAAATTTGGATACACGCGGGACACGCCTGGATTTCAGAAATTTGTGAACGTCCTGGTTAACATGAGTGGCGACGAGAGGAAAGTAAGAAAATTTCACTTGTTTGGTTTGCTTGGCAGGTCGGGCCGTCTGctcgttctttcgttcgttcaGTTGGTTTga

Transcript

BRAKERLUST00000023638

Protein

BRAKERLUSP00000023638.1

MVDVDPDTLLEWLSMGQGDERDMQLIALEQLCMLLLMSDNIDRCFESCPPRTFLPALCRIFLDECAPENVLEVTARAITYYLDVSAECTRRIVAVEGAIKALCSRLVVVDLSSRTSKDLGEQCVKVLELICTREAGAVFEAGGLQCSLTFIREFGSSVHKDTLHSSMNVVTRLCGRMEPQDTNLETCVKSLSTLLKHEDPYVSDGALRCFASLADRFTRRGVDPAPLAEHGLSSELLERLASAAASAGEKTGSSGATPDSKNNSTSVSTIVSLLSTLCRGSPSVTHDLLRAGLPDAIQKALQGDERCVLDTMRLVDLLLVLLFEGRRALPKSCVSIPKGGISVLRRFDSSNERSHRQLIDCIRSKDTDAVIDAIENGGFEVNFMDDVGQTLLNWASAFGTLEMVEYLCERGADVNRGQRSSSLHYAACFGRPAVAKTLLRHGANPDLRDEDGKTPMDKARERNDEGHREVVHILQSPGEWMVPVGSSTSTSTTTPAQPAATPDSTSAEEKKEEAEDVKGDPEMAPVYLKNLLPLFARNYKETMMPSIRKATLALMRKMIHYASQAQLEELSQNSTFASVIVEVLSVVLDHEDDDDGHLTALQIIEDLLEKCQETYISHLARLGVIRHVADLAGPLQDVETVQEEPEAKGNEEETEKKEDAGEIEQGKPYHWHDWCIVRSRDCLYLWNESCALELSNGSNGWFRFILDGKLATMYSSGSPEGGSDSSESRGEFLEKLQRARSQVKLGTPSQPLLSSPGSSRLSVGNWSLTCTKDKEVSVHNADGQQATILREDLAGFVFESNRGTKHTFNAETSLGSEFAAGWMGKRGKRFVSKVEAQKLKIRNLATEIQEKYLLAAQATPREVVAKLQEIVTQLHSACLSQENLTKGGESKESWKEEMFSALKGLLQVLQDDTTVSSFELQSTGLVTALLRCLHQTGKAISSDNENTSNRAAECIAERIEVFKSAFGETEEQLNQEKSGEVTSASILVKKLVAVLESTEKLPVFTYECPGSGLQVLARRLRFQLERAHGESSLIDRTGRTLKMEPLATVGDLERYLLKMVAKQWYDYERNSYHFVRLLRGGDKITFTHMQDFDENGILYWLGTNGKSISDWVNPGSVGIVSVSTSEGRGLPYGKVEDILSRDAAALNCHTNDDKNAWFAIDLGVWFIPTCYTLRHARGYGRSALRNWLFQVSKDGKNWTTLYTHTDDNSLNEPGSTASWPLEPPSDQEGWRYVRLQQAGKNASGQTHYLSLSGFEVYGTVIAAVEEPLGPEQSPSKVVTAGDKLSKSLKPCWSLCPGKAAREVEAALRRQRRLIRSQMLKHLNVGSKVVRGMDWKWKDQDGSPPGEGLVTGELQNGWVEVAWSNGTSNSYRMGADGKFDLRVVENTPSSESAGEPSTSTPGEEGHSEEGPSTEEPEVSSPEKPQQESSSTSQTVDVSSEVLVEAVRVEEIPDEGIFTSDDIIDMPGNAVVVSESSTDSSEHVPSTDEPKETVGEIEEVTEEEEEEEEEVTATPNNTSSVPPTSSNSVSVNISVGETARRLLSSAVNAANSSGSRLSRASDLDMYVAMRGSGLLTGLEDDYDLPEPDEDDDEDDDDDDDDENDEENEDDYEVEEEPESRGGRRRTWDDEHVLKRQFSALVPAFDPRPGRTNIAQTQDIVIPAPGSQESSTSEATTATLEPRLVLTIKGPASLAQPEVEVYLDDPKATIFSYVQKVALAAGISKNERVRRVWEPTYTISYCEVHDPERTESPNETKEHSETMVHWTISYVERYLGSDELPKSEVISFLQRNADAAFLRKWKLSGVPKSIRKNRNCSQLVAAYKEFSNTLDSSPPPSPPSEKPEVKQEVKQEVIKDKSSTVPIPAVVNDISAIEDILQLLKALYSISTSSAYDFGDGNEKYGFIVGNEDFTSKKLTTKLVQQIQDPLVLSSNALPTWSGLLTSSYPFLFPFETRQLYFSCTAFGSSRAIVWLQNKRDVALERSRPLSHRREEQHEFRVGRLKHERVKVPRGDELLDWAMNVLKFHAERKSVLEVEFEDEEGTGLGPSLEFYALVAAELQRKSLGTWICDDVIVDETAREVDIGHGIRPRGYYVQRAGGLFPAPLPQDGPDTERVAKLFCILGIFMAKSLQDSRLVDIPLSLSFLKLLTSSASSSSSSSPLPFSRSSLQVIDDASCSLEDIVECSDTTNELDQPQPSLEENENAINKLDWESSKERELIEEEEELSKEENSELSKTKESVEDMPLTPLAPSWFAGILDDSDMEVVDPHRATFLKQLQELVARKNDILKDDLLTTNEKKARISELKLKTANGVECSVDDLGLTFQFSPSSKVYGFSEVDLTRDGGEKVLTTENAEEYIKLVKEFCLHTGIQRQLDAFRDGFNSVFPMEKLRPFTPDELQLMLSGEQVPQWTREDIMNYTEPKFGYTRDTPGFQKFVNVLVNMSGDERKVRKFHLFGLLGRSGRLLVLSFVQLV

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9ULT8	E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens OX=9606 GN=HECTD1 PE=1 SV=4
Q69ZR2	E3 ubiquitin-protein ligase HECTD1 OS=Mus musculus OX=10090 GN=Hectd1 PE=1 SV=2
Q9VL06	E3 ubiquitin-protein ligase Ufd4 OS=Drosophila melanogaster OX=7227 GN=Ufd4 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003347 (this species only) · gene tree & orthology
Ubiquitin family	E3\|E3 activity\|HECT · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00632 all species →	HECT	HECT-domain (ubiquitin-transferase)	Domain	Interproscan
PF07738 all species →	Sad1_UNC	Sad1 / UNC-like C-terminal	Family	Interproscan
PF18410 all species →	BTHB	Basic tilted helix bundle domain	Domain	Interproscan
PF06701 all species →	MIB_HERC2	Mib_herc2	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR000569 all species →	Domain	HECT domain	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR012919 all species →	Domain	SUN domain	Interproscan
IPR035983 all species →	Homologous_superfamily	HECT, E3 ligase catalytic domain	Interproscan
IPR045322 all species →	Family	E3 ubiquitin-protein ligase HECTD1/TRIP12-like	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR037252 all species →	Homologous_superfamily	Mib/herc2 domain superfamily	Interproscan
IPR041200 all species →	Domain	FKBP3, basic tilted helix bundle domain	Interproscan
IPR010606 all species →	Domain	Mib-herc2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45670 all species →	E3 UBIQUITIN-PROTEIN LIGASE TRIP12	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0016607 all species →	Cellular Component	nuclear speck	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0048856 all species →	Biological Process	anatomical structure development	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0070534 all species →	Biological Process	protein K63-linked ubiquitination	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12231	HECTD1; E3 ubiquitin-protein ligase HECTD1	EC:2.3.2.26	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Blastomussa wellsi tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Blastomussa wellsi, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →