Genomic Location: chr6:10136730...10157409
NR annotation: XP_022788535.1, alanyl-tRNA editing protein Aarsd1-like [Stylophora pistillata]
Species Blastomussa wellsi · all data for this species · gene families
| CDS |
| BRAKERLUST00000024571 |
| Transcript |
| BRAKERLUST00000024571 |
| Protein |
| BRAKERLUSP00000024571.1 |
| UniProt accession | Description |
|---|---|
| Q6DEJ5 | Alanyl-tRNA editing protein Aarsd1 OS=Danio rerio OX=7955 GN=aarsd1 PE=2 SV=1 |
| Q7ZYJ9 | Alanyl-tRNA editing protein Aarsd1-B OS=Xenopus laevis OX=8355 GN=aarsd1-b PE=2 SV=1 |
| Q08B09 | Alanyl-tRNA editing protein Aarsd1-A OS=Xenopus laevis OX=8355 GN=aarsd1-a PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004476 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF07973 all species → | tRNA_SAD | Threonyl and Alanyl tRNA synthetase second additional domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR018165 all species → | Domain | Alanyl-tRNA synthetase, class IIc, core domain | Interproscan |
| IPR012947 all species → | Domain | Threonyl/alanyl tRNA synthetase, SAD | Interproscan |
| IPR051335 all species → | Family | Alanyl-tRNA Editing Enzymes | Interproscan |
| IPR018163 all species → | Homologous_superfamily | Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily | Interproscan |
| IPR009000 all species → | Homologous_superfamily | Translation protein, beta-barrel domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43462 all species → | ALANYL-TRNA EDITING PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| GO:0004813 all species → | Molecular Function | alanine-tRNA ligase activity | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0006419 all species → | Biological Process | alanyl-tRNA aminoacylation | Interproscan |
| GO:0004812 all species → | Molecular Function | aminoacyl-tRNA ligase activity | Interproscan |
| GO:0043039 all species → | Biological Process | tRNA aminoacylation | Interproscan |
| GO:0002196 all species → | Molecular Function | Ser-tRNA(Ala) hydrolase activity | Interproscan |
| GO:0006450 all species → | Biological Process | regulation of translational fidelity | Interproscan |
| GO:0000166 all species → | Molecular Function | nucleotide binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K07050 | AARSD1, ALAX; misacylated tRNA(Ala) deacylase | EC:3.1.1.- | Transfer RNA biogenesis | ko03016 | deepkoala |
Genes whose expression across the transcriptome samples of Blastomussa wellsi tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Blastomussa wellsi, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
