Detailed information of BRAKERLUSP00000025373.1 in Blastomussa wellsi

Genomic Location: chr6:1376988...1406868
NR annotation: XP_027048284.1, uncharacterized protein LOC113675882 [Pocillopora damicornis]
Species Blastomussa wellsi · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O95490Adhesion G protein-coupled receptor L2 OS=Homo sapiens OX=9606 GN=ADGRL2 PE=1 SV=2
O97817Adhesion G protein-coupled receptor L2 OS=Bos taurus OX=9913 GN=ADGRL2 PE=2 SV=1
O94910Adhesion G protein-coupled receptor L1 OS=Homo sapiens OX=9606 GN=ADGRL1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004524 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12947
all species →
EGF_3EGF domainDomainInterproscan
PF00084
all species →
SushiSushi repeat (SCR repeat)DomainInterproscan
PF00754
all species →
F5_F8_type_CF5/8 type C domainDomainInterproscan
PF08685
all species →
GONGON domainDomainInterproscan
PF01825
all species →
GPSGPCR proteolysis site, GPS, motif MotifInterproscan
PF16489
all species →
GAINGPCR-Autoproteolysis INducing (GAIN) domainDomainInterproscan
PF00002
all species →
7tm_27 transmembrane receptor (Secretin family)FamilyInterproscan
PF07679
all species →
I-setImmunoglobulin I-set domainDomainInterproscan
PF13927
all species →
Ig_3Immunoglobulin domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001881
all species →
DomainEGF-like calcium-binding domainInterproscan
IPR000421
all species →
DomainCoagulation factor 5/8 C-terminal domainInterproscan
IPR024731
all species →
DomainEGF domainInterproscan
IPR000436
all species →
DomainSushi/SCR/CCP domainInterproscan
IPR003598
all species →
DomainImmunoglobulin subtype 2Interproscan
IPR013783
all species →
Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR035976
all species →
Homologous_superfamilySushi/SCR/CCP superfamilyInterproscan
IPR000152
all species →
PTMEGF-type aspartate/asparagine hydroxylation siteInterproscan
IPR009030
all species →
Homologous_superfamilyGrowth factor receptor cysteine-rich domain superfamilyInterproscan
IPR036179
all species →
Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR000203
all species →
Conserved_siteGPS motifInterproscan
IPR007110
all species →
DomainImmunoglobulin-like domainInterproscan
IPR008979
all species →
Homologous_superfamilyGalactose-binding-like domain superfamilyInterproscan
IPR012314
all species →
DomainPeptidase M12B, GON-ADAMTSsInterproscan
IPR000742
all species →
DomainEGF-like domainInterproscan
IPR017981
all species →
DomainGPCR, family 2-like, 7TMInterproscan
IPR003599
all species →
DomainImmunoglobulin subtypeInterproscan
IPR032471
all species →
DomainGAIN domain, N-terminalInterproscan
IPR018097
all species →
Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR000832
all species →
FamilyGPCR, family 2, secretin-likeInterproscan
IPR000372
all species →
DomainLeucine-rich repeat N-terminal domainInterproscan
IPR046338
all species →
Homologous_superfamilyGAIN domain superfamilyInterproscan
IPR013098
all species →
DomainImmunoglobulin I-setInterproscan
IPR032675
all species →
Homologous_superfamilyLeucine-rich repeat domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12011
all species →
ADHESION G-PROTEIN COUPLED RECEPTORInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005509
all species →
Molecular Functioncalcium ion bindingInterproscan
GO:0004222
all species →
Molecular Functionmetalloendopeptidase activityInterproscan
GO:0008270
all species →
Molecular Functionzinc ion bindingInterproscan
GO:0004888
all species →
Molecular Functiontransmembrane signaling receptor activityInterproscan
GO:0007166
all species →
Biological Processcell surface receptor signaling pathwayInterproscan
GO:0016020
all species →
Cellular ComponentmembraneInterproscan
GO:0004930
all species →
Molecular FunctionG protein-coupled receptor activityInterproscan
GO:0005887
all species →
Cellular Componentplasma membraneInterproscan
GO:0007189
all species →
Biological Processadenylate cyclase-activating G protein-coupled receptor signaling pathwayInterproscan
GO:0007186
all species →
Biological ProcessG protein-coupled receptor signaling pathwayInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for BRAKERLUSP00000025373.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Blastomussa wellsi tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Blastomussa wellsi, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
TOP