Gene detail

Detailed information of BRAKERLUSP00000026009.1 in Blastomussa wellsi

Genomic Location: not available for this species
NR annotation: XP_020611439.1, uncharacterized protein LOC110049928 isoform X1 [Orbicella faveolata]
Species Blastomussa wellsi · all data for this species · gene families

Sequence

CDS

BRAKERLUST00000026009

ATGCCCCACTCTTCGCCACGGATCACGGCCGTTttgctattgtttttatttacaaTACCAAAGCCTTCGAAACCCTGCATCCAGGTATTAAACGGCTGGAAACCTCTGAAAGTCGGAGAACGCGCAAAACTTGTGAAAGTGGTGTTCATTGGTAAAGTTGTGAACAACTACTCCTACGACAATATCTCGGAAACGTACGCCGCCGATTTTGAAGTGTGGAGAATTCTCAAGGGAAGTAAAATCGTGTATGAGGTTTTGGAAATGCACCCTTCGTCGGTGGTGAAAGTTTATGGATTTGGCGAGAAAAGGGTATGTTTATCGCCCGTTCATCCAGGAGAGATTCACATGGTTTTTATGGTGTACGAACCGAAATCTCGCTCGCTCGTGGCGCGGTACGATGACATTTTCGGAGCCACATCGCCAGCTACCGCCAGCAACGAAGACGACGTATTACGAGCGCTGGGTTGGAAACCGTGGTCGAGCTGGAGTCGGTGCAGTAAAAACTGTGGCGAAGGAGAGCAAACTCGCACTAGAGAGTGCTTTGCAAAAGAGTGCGATGGCTGGACCAAGGAAACAAGAACTTGTAACAAGTACGAGTGCTATGGTTTAAAGGACATAGCGCGACTTCTTCGAGAGGAACAAAACCCACCCGCCCCTAAAAACGAGATCATTAAAATGGAGAATGGCCGCACACCTTCAATACCAGTCTCTAAAGTTTTTCGATACTATAATTATTTCCCCGATGATTTTTCAATTCTCATTACATTTCGCGCCATTTCTCTCACAAACGTTTACCTCGTTGCGGTGTACGATTATCGTAAATCTCTGAACTTAGGGGTGAGAATAACACCTGATTCAGTAAGCTTTGAGTTCGAGAAAAACTCTGCGTTTCACTATCGCGGATGGTCGCTGGATTTTGCTGTGGAAATTCAGAAAGAACAATGGCATACTCTCGGTTTCAGTATCCAAGAACGCAACTTAACGGTCTTTTGGGACTGCAAGAGGATTGGGTCCAAGAACCTGCAGGAAAAGTTTTCCCTTGTTACGGACTCTTTTGGTGAAATTTACGTTGGAAAACCATTGCTTCCATCTTCTACTGAGCGATACGAGATTGAGGTTAGCGAGTTGTACTTCGTTCCAGATGCCGTCGCGTCCAGAGAACAGTGCGATGTTCCAATGTTCAAACCACACCTTGTCAAACATGAATTTGATggcagtggtggtggtggtcCTCCTGGCTTTTATACCAAAGAAGGCTCCGGTACGCCAAATTATGTTGACGATCCTGAAAGTGAAGTCGAAATATCGTGGTCTGAGTGGTCCCAATGTTCTCAGACCTGCGGAAAAGGTCAGAGAAAGAGAGTAATGATGTGTGACCTGGAAAACAGCTATTCTGACGAAAACGGCATGCTAAGCGAGGAATGTCAAAAGGCTTTGCAAAATGTGGACGTGAAGGAGTGTTCTTTACAAGACTGCCCAGCCCAATGTGATCGCCCGTGTTTAAATGGAGGATTTTGTTTGAGCCGCAATCACTGTCAATGCCAGCCTGGTTACCATGGTGATGTCTGCGAGAGAGTGCAATGCAAGATTCACTGTCGTAATGGCGGCACTTGTGTGGGGCCATTCAAGTGTAGCTGTCCCCCCGGATATGGTGGAACACAGTGCGAGAAAACGCTGTGTAGTCCACCTTGTCAACATGGCGGACAGTGCATTAGGCCAAATGTGTGTCACTGTTCTCGAGGATTCCTCGCACCTTACTGTAGACCATCCTGTAGCCCTTCCTGTCTAAATGGCGGCGTGTGCGTGGGTCCGAACAAGTGTCGTTGCGCCAAAGGCTTCACGGGAGAATATTGCCAACAAGCTGTGTGCAATCAGCCCTGTATGAACGGTGGCGTGTGCTACCAGCCTGACAAATGTTCTTGCCTTTACGGATGGCACGGAAAAAGTTGTGAGAAAGCGCGGTGTTTTCCTAACTGTCGAAATGGCGGTACGTGTATAAGACGAAACACTTGCATGTGCACTCGGGGATACGTTGGTTATTACTGCCAGTATGGTGTCGGTGAGTATTAA

Transcript

BRAKERLUST00000026009

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
C0HL12	Adhesion G protein-coupled receptor B1 OS=Rattus norvegicus OX=10116 GN=Adgrb1 PE=1 SV=1
J3S6Y1	Thrombospondin-type laminin G domain and EAR repeat-containing protein OS=Mus musculus OX=10090 GN=Tspear PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002840 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF12661 all species →	hEGF	Human growth factor-like EGF	Domain	Interproscan
PF03146 all species →	NtA	Agrin NtA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR004850 all species →	Domain	NtA (N-terminal agrin) domain	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR008993 all species →	Homologous_superfamily	Tissue inhibitor of metalloproteinases-like, OB-fold	Interproscan
IPR013032 all species →	Conserved_site	EGF-like, conserved site	Interproscan
IPR050906 all species →	Family	Notch signaling pathway	Interproscan
IPR048287 all species →	Domain	Thrombospondin-like, N-terminal domain	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24044 all species →	NOTCH LIGAND FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0043113 all species →	Biological Process	receptor clustering	Interproscan
GO:0043236 all species →	Molecular Function	laminin binding	Interproscan
GO:0005112 all species →	Molecular Function	Notch binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERLUSP00000026009.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.