Genomic Location: chr6:25630786...25635488
NR annotation: XP_020623081.1, chromobox protein homolog 1-like [Orbicella faveolata]
Species Blastomussa wellsi · all data for this species · gene families
| CDS |
| BRAKERLUST00000026663 |
| Transcript |
| BRAKERLUST00000026663 |
| Protein |
| BRAKERLUSP00000026663.1 |
| UniProt accession | Description |
|---|---|
| P05205 | Heterochromatin protein 1 OS=Drosophila melanogaster OX=7227 GN=Su(var)205 PE=1 SV=2 |
| P45973 | Chromobox protein homolog 5 OS=Homo sapiens OX=9606 GN=CBX5 PE=1 SV=1 |
| Q61686 | Chromobox protein homolog 5 OS=Mus musculus OX=10090 GN=Cbx5 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001991 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01393 all species → | Chromo_shadow | Chromo shadow domain | Domain | Interproscan |
| PF00385 all species → | Chromo | Chromo (CHRromatin Organisation MOdifier) domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR008251 all species → | Domain | Chromo shadow domain | Interproscan |
| IPR016197 all species → | Homologous_superfamily | Chromo-like domain superfamily | Interproscan |
| IPR051219 all species → | Family | Heterochromatin-associated chromo domain-containing protein | Interproscan |
| IPR000953 all species → | Domain | Chromo/chromo shadow domain | Interproscan |
| IPR023779 all species → | Conserved_site | Chromo domain, conserved site | Interproscan |
| IPR017984 all species → | Domain | Chromo domain subgroup | Interproscan |
| IPR023780 all species → | Domain | Chromo domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22812 all species → | CHROMOBOX PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0000122 all species → | Biological Process | negative regulation of transcription by RNA polymerase II | Interproscan |
| GO:0003682 all species → | Molecular Function | chromatin binding | Interproscan |
| GO:0005721 all species → | Cellular Component | pericentric heterochromatin | Interproscan |
| GO:0006325 all species → | Biological Process | chromatin organization | Interproscan |
| GO:0035064 all species → | Molecular Function | methylated histone binding | Interproscan |
BRAKERLUSP00000026663.1.Genes whose expression across the transcriptome samples of Blastomussa wellsi tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Blastomussa wellsi, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
