Gene detail

Detailed information of BRAKERLUSP00000027112.1 in Blastomussa wellsi

Genomic Location: :...
NR annotation: CAH3107198.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERLUST00000027112

ATGGAAGGAGGACCAGCTAATGAAGAAAATCCAAGCGAAGAAGAATGGCCTTTGGAGAGGGCCGAGATTGCAGTTCAACAGCTCTATGAGTTCAGGGACCATTACTTTGAACACAATTCCACTGATAAAGCCTCACTGAAAAACCAAGAAACTcaggaaaaattaaaagagaCTCTAAACACCCTGGACTATGTGCAGGCTTCTTGTGAGGAAACAGCCAGATGTTTATTTTTACGAGGGAAAGCTCTGAATGTGATGCCTGACCACGATCCCTTGGCACAAGATGCTCTCTCAAAAGCTGTCAAGCTGGATCCTAAACTACTTGAAGCCTGGAATTGCCTTGGAGAATGTTACTGGAAAAATGGAGAAGTAGAAGCAGCCAGAAATTGCTTTGTTGGGGCATTAAACCATGCAAAGAATAAAAAGTCCTTGAGGAATCTTTCAATGGTGTTACGACAGATTGGAAAAGaTCAAAAGGAAAAAGTAGAAAACATCAAAATGAGTGTGGAGAGAGCAAAAGAAGCAGTTCAGTGTGATGTAAAGGATGGAATCTCTTGGTATGTGCTCGGCAATGCATACCTGTCATTCTTCTTTTGTGGATCGCAGTCTCCGCAGCTTCTCAAGCAGTGCATGACTGCTTACTTGCAAGCTTATAAAGATCCTGTGGCGAGAAATAACCCAGATCTGCACTTCAACAGAGCAATGGCGTACAAGTTTCAAGAGGAATATAACTTGGCCATAGATGACTTTAAAAGGGCTGAAGTGCTGGATCCAGGCTGGACAGAGCCAAATAATGAAAAACATAAGCTGTTAAATATGCTTACAAAAGCACTTGATCTAGTGGCAGGAAAGGGTAAACTAAAAGCCAAGAGACTCCATTCCATGGTCCAGTCCTTGGGTCCTTCAGACCTGGGTCCTTATGGTGGCGGAAGTTACACCAGTCCATCAAGTCAGACGGTCCAGCTCGATCATGTTCCTGTTTCCAAACTGGTTTCTGGTTTCAATCCTAATAAGGTGATTGTTGGCAAAGTTGTGGGCTTTGTTCCAATGGATGATCCAGTACCATATATCTTTGCCCTTGTGGACAGTGAAGAACAGTGTTTACCAGTTACAGTTTACAACATGGCTGTAAGATCAGGGTTTGCTGTTGGTGATTCAGTCGCGATCCCTGAACCTTTCTGTCAGGAAACAAATTTCACTGAAAATGACAAGACATTCAAGTTTTCGTCTATTCGAGTTGACAATCCGATTGTTTTGGTTGTAAATAAGAAAAAGCTTGGTTCTAATAGGCTGGCTCCTTCAACTCTCATGGTTACTACAAAAAGTTTTGAAACCATGTCCGTAGATATTTTGTTCGACACTCCATTTCGTCCACACAGTCGCCCGTGTGGTGAACTTTCAGTGTCAATGTTAAAAACATGGCTGTCATCTTACGGCCATCCGTCAACTACTGCTGGGCCAATCATAGCATCGACAATCACCATTGAAGCAATTCAAGACCTGCTACATGCAAATGGTTTCCCCATTGAGGCTCCTGGCCATGTGGACATGTGTCCAGGACCATTTGAAGACACCCAGTTTGACGCTGTAATAGATGTTGAGACCTCCGACGATTGTATGGACGATGAAGAACTCAAGTTCACAGACCTGGATGCTTGCTCAGAGTATGGTTATGGTGGCTCAGATTTTTCAGAAGATGAGATCAACTTTTTTCAAGATCTTCCTCTGAGTCCTGACTCGCCACTGTTGAATGATGCTGCTGGCATAGATTTTGGGTTTGATTCGGGGATTGAAGCAGAGATGGATGAACCTCATGATGGGGCAGAGGGAAacgatgaaaagaaagaaagtaaaGAGAAACAGGAGAGTTGTGACGATAAGAAATCTTCAGATGAATCAAATGGGCTGCAAGCTGAGAAACAAAGTGGATCAAAACCAGTCAACAACGACACCAAAGCAGAAGATAAAGAGAAGAAAGTGATGGAACCcgaagaagaagatgaagagGAAGAAAATGTAGAAAAAGATGATGATGaacTTCCACACTTTCATTGTCAGTACTTATGGGAGTTCCTTCACCATATTCTGTTGGAAAAACACAACAAATACATCACATGGAAAAACCAATCCAGAGGAGTGTTTCGCCTCATTGACCACAATGGCTTGGCACGCCTGTGGGGCCGacagaaaaacaggaaaaacaTGACTTACGAGAAATTAAGCCGTGCTCTTAGATATTACTACAGCAAGAACATACTCAGAAAGGTCCCTGGCCAGAGACTGACTTACAAGTTTGTTCGCAATCTTAATGGCAAGAAGTATCCCATCTGA

Transcript

BRAKERLUST00000027112

Protein

Uniprot

Gene family

Uniprot term	Description
Q0P5H9	Tetratricopeptide repeat protein 5 OS=Bos taurus OX=9913 GN=TTC5 PE=2 SV=1
Q8N0Z6	Tetratricopeptide repeat protein 5 OS=Homo sapiens OX=9606 GN=TTC5 PE=1 SV=2
Q5BK48	Tetratricopeptide repeat protein 5 OS=Rattus norvegicus OX=10116 GN=Ttc5 PE=2 SV=1

Gene family	Subfamily
Transcription Factors Family	ETS

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00178	Ets	Ets-domain	Domain	Interproscan
PF13181	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF16669	TTC5_OB	Tetratricopeptide repeat protein 5 OB fold domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR000418	Domain	Ets domain	Interproscan
IPR038645	Homologous_superfamily	TTC5, OB fold domain superfamily	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR032076	Domain	Tetratricopeptide repeat protein 5, OB fold domain	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR046328	Family	ETS family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11849	ETS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0030154	Biological Process	cell differentiation	Interproscan