Gene detail

Detailed information of BRAKERLUSP00000027318.1 in Blastomussa wellsi

Genomic Location: chr7:16757639...16778660
NR annotation: XP_020605448.1, inactive rhomboid protein 1-like isoform X2 [Orbicella faveolata]
Species Blastomussa wellsi · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERLUST00000027318

ATGGCGTACTCGGGTCGGGGCTCGATTGCGTCGGGCGCATCGAATGTGTTTTACACGCAGGAGCACATAAATTTTGATGATTTGAATGAAGAAGAATATTATCCCgagtttattcagtattttcaAGTTAGAGGGTCTTCAAGACCCAGACCCAGCATGGCCAGCACTAGTATTCCACGGATGTCAGCTAGGGCGAGCATAGCAAGCATATCCAACACTCTTAAGCGTGGAAAGAGAAAGATTATCAAGGGTACAGAGAACTTCTTTGGTCTTGTAGACGGCGATGAAGAGCATGACCAGCTACAAAGGAAGTGGACGCAGAGAAAGAAAAGGCATTACCAGAAGCGTTACGGAGCTCTGGTTGAGGGCCCTGAGGATGATGCTGTGGATAATGTACCTCAATCAGCCAAACAGGCGACAAGTGGAACAGCAAGTATTAGCAGCTATCAGAGCTTACATGCACCTGACCCGAATATTGTGCGAACATTGAGTAGACGGCAATCAGTGGCTTCTATGGCCTGGAAAAgaatgaagaaagtaaaagacgaTCCTGGGAATTTCAAATCTCCTGGAAGGCCCCAGCCCGTCAGTACGTTACTTGAGACAGGGCGAAGCTTCTCGCCAGCTGTCATGTCGCAGTCAGATGCTGGTGAAGTGGACAGTGCCTTTCGCCTTGATGGTGAAATTGATCGCCGTGAAATTGATGACGAAGTCTTCTTTAATTTTGTGCCTGAGAGACCCAAAAGAAGATTGGACAAACCAGGATTTCTACCTGGAATCCAAGAGGAAGAGAAACCTCTCCCACCTGTTCCACAAGAAGCAAAAGATGAAGTGGAGGGACCCCCGAGACCTCCTGTTCGTAGCACTCGAGGGCAAAGGATTAGAGATAGACCCCGTGTCACTAATGCCAACCGTCGTGAATATGGGAAAGGGTTGGTTGGTAGATGGTTAAACAGAACAATCAAGCGAAAACGTTTGACGAGCACTGTCAAAAAACAGATGGCATCACTGTGTGATCATAGaCCTTTCTTTACTTACTGGATTTCATTTGTACAGTTGATTGTACTTGTTGTTGGATTGTCTGTTTATGGATTTGCTCCCATTGGGTTCACAGAGACAACAAAAGTGGATCTGGTTGAAAAAAGTCAGAAAGGGACGCTTATACCAACATACATGGACCGGCAAATTCCTGACAACTTCTGGATTGGTCCTGATCAAGCAGGCTTGATCAAAATGGGGGCTAAGTTTGCTCCGTGTATGCGTACTGATAACCGACTACGAGAGGTGCTTGAAGAAGATAAGAAATATGAGAATAGTACAGGGTGTTGTGTTAAATCCGACGACTCGGGCTGTATCCAGACTACACCAAAAGAGTGCTCTGAAGCGTTTGCCTACTTTTACAAGTATTCCAAAATAGACAATAACACAAGAGTTGTCTGTGGTCAGGACCCATTGACATGCTTAAATCCCTCGTCCGTGGAACCCCATGATTGGGACCTGTATGACATCACCAAATGGCCTGCTTGTAAAAAATCAAAGCCCAATTTGTCTCCGGCTGATTACCCACACATGACTTGTGATATCCATGGCCGTCCATGTTGTATGGGCAACGAAGCTATATGCAAAATTATCAGCAAGGACGAGTGTGAATTTTTTGGTGGCAGATTCCACGAGAATTACACGCTTTGTTCTCAGGTGGATTGTCTGAGCGATACGTGTGGAATGTTGGATTTCCACCGCAAGGAAAAGCCGGATCAAGTTTATCGTCTTTGGATGGCTATATATGCACATGCTGGagtcATTCATCTGGCCTGCACCTTAATCTTTCACTTCACCATCATGCGCGACCTCGAGAAGATGGCGGGCTGGCTACGTCTGTCAATCATTTATATCTTCAGTGGGATTGGCGGATACCTGTATAGTGCAATTCTCCTTCCTTACCAAGCAGAGGTTGGTCCTTCGGGTTCCATCTTTGGTGTGATCGCCTGCTTGTTCGTTGAGCTGTTTCAGAGTTGGCAGATCATAGCCAAACCGTTCACAGCCCTGTTCAAACTCTGCGGTATAGTCCTTCTGCTCTTGTTAATAGGCCTGTTGCCTTACGTGGACAACTTCGCTCACATGGTTGGGTTCTTGTTCGGGTTCTTGCTAGCCTTCATCCTTCTTCCTTATGTGTCGTTTGGCGAGTTTGACAGACGACGAAAGCAGATTCAAATTATCGTGTGTTTCTTGTTGGTTATCACATTGTATGTGGTGGGATTTCTCGTGTTTTATATCAGTCAAGATGCCGGATGTAATGGATGCGAGTATTTGAATTGTATTCCCTTCACCCTCGATTTCTGCAAGCTTGGGGGACAAAATCTACAGTCAAGGACATTGAAATAA

Transcript

BRAKERLUST00000027318

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6GMF8	Inactive rhomboid protein 1 OS=Danio rerio OX=7955 GN=rhbdf1 PE=2 SV=1
A7YWH9	Inactive rhomboid protein 1 OS=Bos taurus OX=9913 GN=RHBDF1 PE=2 SV=1
Q96CC6	Inactive rhomboid protein 1 OS=Homo sapiens OX=9606 GN=RHBDF1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001793 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01694 all species →	Rhomboid	Rhomboid family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035952 all species →	Homologous_superfamily	Rhomboid-like superfamily	Interproscan
IPR022764 all species →	Domain	Peptidase S54, rhomboid domain	Interproscan
IPR051512 all species →	Family	Inactive Rhomboid	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45965 all species →	INACTIVE RHOMBOID PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0042058 all species →	Biological Process	regulation of epidermal growth factor receptor signaling pathway	Interproscan
GO:0050708 all species →	Biological Process	regulation of protein secretion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K27588	RHBDF; inactive rhomboid protein	-	TNF signaling pathway	ko04668	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.