Gene detail

Detailed information of BRAKERLUSP00000027613.1 in Blastomussa wellsi

Genomic Location: not available for this species
NR annotation: CAH3044404.1, unnamed protein product [Porites lobata]
Species Blastomussa wellsi · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P8E9	NHP2-like protein 1 OS=Xenopus tropicalis OX=8364 GN=snu13 PE=2 SV=1
Q5XH16	NHP2-like protein 1 OS=Xenopus laevis OX=8355 GN=snu13 PE=2 SV=1
Q3B8S0	NHP2-like protein 1 OS=Bos taurus OX=9913 GN=SNU13 PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008937 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01248 all species →	Ribosomal_L7Ae	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029064 all species →	Homologous_superfamily	Ribosomal protein eL30-like superfamily	Interproscan
IPR002415 all species →	Family	H/ACA ribonucleoprotein complex, subunit Nhp2-like	Interproscan
IPR004038 all species →	Domain	Ribosomal protein eL8/eL30/eS12/Gadd45	Interproscan
IPR004037 all species →	Conserved_site	Large ribosomal subunit protein eL8-like, conserved site	Interproscan
IPR018492 all species →	Family	Ribosomal protein eL8/Nhp2 family	Interproscan
IPR050257 all species →	Family	Eukaryotic ribosomal RNA-processing and assembly protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23105 all species →	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0042254 all species →	Biological Process	ribosome biogenesis	Interproscan
GO:1990904 all species →	Cellular Component	ribonucleoprotein complex	Interproscan
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0000470 all species →	Biological Process	maturation of LSU-rRNA	Interproscan
GO:0022625 all species →	Cellular Component	cytosolic large ribosomal subunit	Interproscan
GO:0030490 all species →	Biological Process	maturation of SSU-rRNA	Interproscan
GO:0031428 all species →	Cellular Component	box C/D methylation guide snoRNP complex	Interproscan
GO:0032040 all species →	Cellular Component	small-subunit processome	Interproscan
GO:0046540 all species →	Cellular Component	U4/U6 x U5 tri-snRNP complex	Interproscan
GO:0071011 all species →	Cellular Component	precatalytic spliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERLUSP00000027613.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.