Gene detail

Detailed information of BRAKERLUSP00000027705.1 in Blastomussa wellsi

Genomic Location: not available for this species
NR annotation: XP_020625571.1, E3 ubiquitin-protein ligase RBBP6-like isoform X1 [Orbicella faveolata]
Species Blastomussa wellsi · all data for this species · gene families

Sequence

CDS

BRAKERLUST00000027705

atggctgcgaaggagactacAGAGGATTCCAAAGCcaaaggaaaggagaaaggcTCAGAGTCTGCTAACAAGAAAGTTCCCTCAGAGCTAAGATGTCCCTCTTGCAAGAATTTACTGACAGATGCTGTGTTGATTCCTTGTTGTGGAACAAGTTACTGTGATGATTGCATAAGAAACTACCTTTTGGAAAACGAGCAGGAATGTCCATCTTGTGGTTCAGAGAGTGTTTCTCCTGATTCATTGGTGATCAACAAACAGCTTAGGCAGGCTGTTAATACTTTTAAAAATGCCCGTCCAGCCAGTCCTTATCCAAACCAGGCAGTAACTGCGAAGAGTACATCGGCAGTTGTTGCCAACAACACTGGGGTTAAGCAATCCCAGCCAGCAGTGAAAGTTGCAGATGACAGTGCTAGTGAAGATGCTGTGTCTGACAGTAAACCAGTTGAAAATAAAGCTGTCAAACAAATAAATGAGGCAGATAGTAAGACAAAAGAACGTTCTCCGAAGCCTGTTCAACCTGTTACAAGTCAACCTCAACAAATTCGAGTCCACCACCGTGATGGTCCACCTAAACAAGGTGTTGGCTTTCATCCAGGCGGTGCACCATTTGATCCTCGCAGAAGGCAAGGTGACTTCCCTCCAAGGGGTCCTCCTCGGGTTCCTGAAATACGCCCTGGCATACCGGAGCCTATTGTACCTCACGGACTACCCCCAGAACACGTGCCCCGTGTTCCTGCTGTGAGACCTGCTATGGCCGGCCCAGCTCCACATTTTGTGCCTGGCCCGATTGGAGGGATGCATGCAGTACCACACGCGGCAGCAATTCCCCGTATACCTGTTGTCCCTACTCTGGTGGGGACACCACTACCGCACCGTCCAGCGTTTGGGCCACCGATGTTCGACCCACTCCACCACCCTGCCGATTTACCCAGATCTCTCACTCCACCTATATCCGAAAGAGAATTTTACAAATTACAGAAGAAACTAAAATCAAGAACAAAGAAGAAGCGAGAGCATTCTTCAGAAACGTCTTCCTCGCGTCCCAGAAAGGAACCAAGGAAAGATGGCGGTAAGTTCGACTTTGACGACGAACTCTCAGAATACCGGGAACTTCAGAAAAACCGTCAACGTTTGCCCTCACGGTCTTTGACTCCATCACGCTCATGGTCACGTACCCCATCACGGTCGCGGTCACGATCTTTGTCACGTTCACGTTCCCGCTCACGTTCATCTGCAAGCCCCGCACGTTCACCTACCCCAGAGGGCTGGGACGAATCAAGATCCCCATCGCCTGCACCGTCACGTGGTCAGAGCGCTGGCAACGCGTCCGCAGAGGAGAAAAAAAAGAAGCACAAGAAACGAAAAAAGGAACAGAAGACTAAAGGACGAAAGAAACAAAAGACATCGCATAAAGAAGGACAAACACCCTCAGAACAGAAAACAGAGACTGCTGTTGTCAAGGCGGGAGAGAAAACCACTCAGAAAAAGAAGCATAAAAAGCAAAGAGAGAAAGTTGGTGGCAAAGAAGAGGAGAAAGGCAAGCTGAAAGATGGCGGGAAAGCGAAGGGTAAAAAGGAAGTCAAAGAGAAAGcgaggaaaaaagacaaggatAAGAAGAAGCTGAGTGAGAAAGAGAAAGGGAAAGAAAAGGAGAGTGAAAAGAAACTGGAAGAGAAGAAGGGAAAAGAagggaaagagaaaaagaagaaaaaggagAAAGACAAGAAGGAGGAGCCATTTGGAAAGAAACGAAAGAGtaaaaagaaacacaagaaGCACAAACGACACAAGAAGGACAAGTCCAAGCTTGTAGAGAAAGATGGAGGTGAAGCCGCCGAGGATAGATTAGCCAAGAATGTGTCATCTGAGGCCGGTAACCTTGAAGACAAACCTACAACAGAAGATGAAGAAGTTGAGCAACATGATGAAAGCGACGAGGAAGAGGCTGGCAGTGAAGAAACGGAACAAGAAAGAATGGATGAGAAAGAAAGGGGTTCAGAGGATGGAAGCGAGGACAGTGAAAAAGAAAGTGATGAAAAGTTGCAAGGCAGTGAAAGCGATGAAGAGGAAGATGATAATGAAAGTGACGAGGAAAAGCTGTTAGGAAAGGAGAGTAACGACGAGGAAGACCATCAGGTTAAAACTAACAAGAAACTGGGCGGAATTGATAGCGACTTTGAAGAGGATCGAGGGGAAAAGAAATTACTTGCAAGTGACAACGAGAGTGGGCAACAGGCTGAAAGGAATAAAGACAAGATGAAAATAGCAGGAATTGGGATTGAAGAAGACCAAGGGTTTAAAGGTAGCAGAAAGGAAGAGCTTGAGAGCAGAAGTCATAAGGGAAATAATGAACAAAAGGGTGAAAGGAATAAGGAGAAACGGGGGGGAGACGGACGACATAAGGTACACACGCAGGGAGGTGGGAGTGACGGTGGAAAAGATGCGAAGAGTGAAGTGGCAGGGCATGAAAACCGTGCTAGTCGCTTAAGAGAATCTACAAACGGAAATGATCAACGAACAAATCATGAACACCGCATGAGCGTGAACACCAACGAAGACGATGTGAGTAATAATGGAGAAACACATGAAAACGGAAGTTTTAGATAG

Transcript

BRAKERLUST00000027705

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P97868	E3 ubiquitin-protein ligase RBBP6 OS=Mus musculus OX=10090 GN=Rbbp6 PE=1 SV=5
Q7Z6E9	E3 ubiquitin-protein ligase RBBP6 OS=Homo sapiens OX=9606 GN=RBBP6 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003950 (this species only)
Ubiquitin family	E3\|E3 activity RING\|U-box · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00097 all species →	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR039577 all species →	Family	E3 ubiquitin-protein ligase Rad18	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR018957 all species →	Domain	Zinc finger, C3HC4 RING-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14134 all species →	E3 UBIQUITIN-PROTEIN LIGASE RAD18	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006301 all species →	Biological Process	postreplication repair	Interproscan
GO:0006513 all species →	Biological Process	protein monoubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0097505 all species →	Cellular Component	Rad6-Rad18 complex	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERLUSP00000027705.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.