Gene detail

Detailed information of BRAKERLUSP00000028229.1 in Blastomussa wellsi

Genomic Location: not available for this species
NR annotation: XP_020625212.1, neuronal PAS domain-containing protein 2-like [Orbicella faveolata]
Species Blastomussa wellsi · all data for this species · gene families

Sequence

CDS

BRAKERLUST00000028229

ATGTCCAAAGAAGTGGAATTACCGCAGGGAAAAATAAAACTCCATTCTTCTGAACGATTTCAAGATAACAACGAAGAATATGAAAGCAAACGGACAGATCGCAATCAATTAGAGAAGAAACGTCGTGACAGATTTAATGGACTTATCGAcgagctggcggtttatttggCAGATAGATGCGACACaaagaaaaacaaggaaaagagCTCCATTTTGAAACTCACTGGTGAATATTTTCTTGAGCAGGAAAAAGTAGCGGCTGAGAAGGCAGAGAAGGCTAAGAAGGATTCATTTAAAAATGCAAAACCATCGTTCGTCGCGGATGATGAGTTGGATTTCGTATATCTGGAGTCTCTGAATATGTTAATATTCGCTTTGGACCAAACAGGAAAGTTTGTTTATATTTCAGACAATGCTCAATCGACTTTAGGGTACTTACCGGGTCAAATATTACAGCGTAACATATTTGAATTTATCCACCAATGGGATCACGTTGTTTTCCAGGGAATGGTGTCGGTTTTGAACGAGAAAATCGTTCGTCCCCATGGTGAACGCCTTGGAGAACGCTTTCAACCGTTTTGGTGTCGATTTCGACGAGGTCCGTACAGTCAGGGcaacaattttgaaacaatctGCTGCTTTGCAACTATATTAAGAAATTTAACGAGggaaaatgatgaaaatatCGAAGTTTCCGATTGTATAATTATATTAGCGAGACCATTGAATAGTGTTCCAGTTGAAAAAACACTGCTCAAGGCCGATGGGCCGCAAACGAAATTTACGGCTTCGTTGAATATGGAAGCGAAATACGATTACTTGGACAAACGTGTTGCCTCCGTGCTCGGCTTTTTCCCTTCGGAATTAATTGGGAGTTCGTTGTACGAATACTGTCACGTTCAAGATCTGGACGATCTGGTAGAATACCATAAAATTCTGCTATTAACCGGGAGGATAACAACATGCTGTTATCGCCATCTTACAAAAGGACAATCGTGGATTTGGCTTCGTTCTCGCTACCATCTATCTTACAGCGATTGGGACTCAAGACCTCAAGCGGTGACTTGTCTTTCGTGGGTTGTTCCTTACAGTGAAGTTTGCGCAAAACAGGCAGAAATATTGACTCGCGACAAAGAAAGTTTTGCGCAGGTAAGAAGTGGTACATACAAGGGAATAGACGAAAATTTGAATTCTTCTAATAGCTCTTTGAACTTGCCAGCAGTTACTTCACCAGATTTGGTAAACGAAATTGGAGAAAAAGTTGAATGGAGAAAAGCGACTGTTCAGACCGTTGGAAGTACAAGTCCAAAACCAGGACCGTCAATGGCGCGGACTCCTGGATCTGAGGACACCCAGAGCAACTGCGCGTCGGTGATTCCGTACACAACTGATCTGAATGCTAGTCAGCAAATTGATTTTCAAGAAGGTTTAAAATTTCTACAGAGCCTTGATTTACCACTGGATTTAACGGATGCCCAGCAATCACTCCATCAGCTACTGCAAGAAAAGTACATGAAAATTATAAACGCGATTCAAACTCAGACAGAACAGCTCAACGCAATTCAAAAGCAGATTGAAATTCAAGGAGAGATCCGCGAGCTGATAGAGCGACTCGAGGAGGATAGAGCATCAAATGACGTCGAGAATGAACGTAAGACGACGAGAGAAATGCTTACAAAGTTTGAAGAAATGCGACGGATTTCTTCGGTTTCACAAGCCGAGAAGCCTTCAGCCGAAAGTGTAGCCATTTGTTCTACGCGACTTCAGGAAATCGACACTGAAAGCAGTTCATTCACCACCATGGCAGACGAAATTCAACGGATGACAAATGAAGAAGACGAGCAGGGTCATTTACCGATGCTCGTGGAACAACCCAAGTCCTCACAAGCTCTTTCTAATATTTTTTATAACCAAGAGCAATGGCTTCAAACACAAGCACAAGAAGCACAACTGGGGCAGCAAACTCTCTTTTTGCAGCAAATGCTCAACTCACAATATTTTCCACAGGAGCAACTGATCCTGAatcagcaattagaacaaaggCAAGGGGATGAAGAAATTCTGCAAatattacaacaacaacaacagcaacagctaCAGCGACAAAaccagcagcaacaacaactacagcaacaacaactgcagcaacaacaacaacaacaactacaacagcagcagcagcagcagcaagaACTACAACTACTTctacagcagcagcagcaacaacaacaactacagcagcagcaacaactacaacaacagcaacaacaacaactactaCAGCAACAATTACACCAACAGCAACTAATACAACAAGGacagcaacaacaactacaacaacaTCAACTGCAGCAGCGACAACAACTACAGAACAATGGCAACAGCAACCGTGAAAATCGAGCACTTGTGTCGCAACTCGTAAATCCTTTTAACACCGAGTCTCCCCAGGAAATATCAACCATGGCAAACGAACTGTCTTTTGCAAACAACGTTCATCAAAATTCGCCTTTCGAACGTAACTCAGTTTCTCCTTCGAGTGTAAATGAATCTTTGTATGAATATAAATGGTTTTAG

Transcript

BRAKERLUST00000028229

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q91YA8	Circadian locomoter output cycles protein kaput OS=Spalax judaei OX=134510 GN=Clock PE=2 SV=1
Q9WVS9	Circadian locomoter output cycles protein kaput OS=Rattus norvegicus OX=10116 GN=Clock PE=2 SV=1
P97460	Neuronal PAS domain-containing protein 2 OS=Mus musculus OX=10090 GN=Npas2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003739 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00989 all species →	PAS	PAS fold	Domain	Interproscan
PF08447 all species →	PAS_3	PAS fold	Domain	Interproscan
PF00010 all species →	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036638 all species →	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR035965 all species →	Homologous_superfamily	PAS domain superfamily	Interproscan
IPR000014 all species →	Domain	PAS domain	Interproscan
IPR047230 all species →	Family	Circadian locomoter output cycles protein kaput-like	Interproscan
IPR013767 all species →	Domain	PAS fold	Interproscan
IPR011598 all species →	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR013655 all species →	Domain	PAS fold-3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46055 all species →	CIRCADIAN LOCOMOTER OUTPUT CYCLES PROTEIN KAPUT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0032922 all species →	Biological Process	circadian regulation of gene expression	Interproscan
GO:1990513 all species →	Cellular Component	CLOCK-BMAL transcription complex	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERLUSP00000028229.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.