Gene detail

Detailed information of BRAKERLUSP00000028276.1 in Blastomussa wellsi

Genomic Location: not available for this species
NR annotation: XP_020605057.1, protein NLRC3-like [Orbicella faveolata]
Species Blastomussa wellsi · all data for this species · gene families

Sequence

CDS

BRAKERLUST00000028276

ATGGAGATTTTCAAGGATTTGAGGATTCCAGTGCTAGAAACGTTCGAATCGCCAAGCTTAACTCGGGTAGGAAAATTTCAACGGGGAATATTGACTGTCGCTATTTGCGTTCTACCGACGTTACAAGCGATTCGGTGGCAGCGGGGACGAAATCACTCAGGCTCCGAATTTCGCTGTAAGGTTAGGGATGGAGATCTCGCTGAGAGCGACAGTGGAGAGCTTACATCTCAATTCTTTGAGGACTGCACCAAACAATACAGCGGTGTTTCACAGGCCATGTTTGTAATCCTCGTTATTCTGAATCTTTTAATCATCCAATTCTACATGTATTACGTTTCCGAGCGATTCAATTCCTGGTTCAAGCTCAGGGAGACAGAACAGCGTGGCAAAATACTAGCCGAGCTGAAGAACTCAACCGCAGTGTTTAGAGCGCACTCGATTCAACTCGGCATGAAGCTTGTGTCTGCTATAATGTTCGTTGTATACAATTGTCTTGTGCGCACAGTTGTTATACCCTCAGAGAAGGAGTATCACAAACAATGGGCGCCACTTGATTATGTTTTCGACGCTAACTCGCTCGCAAAAGTAGTTATATGCTACGCTGATCAAGCCTTCGAATCATCAATGTTTAATATCGCTATGTTAACCTTTGCAACGTTTTGTGGTACTCTTAGTTTGACAGAACTTGCTTATACTTGGCAAGAGACGAGTGCCTTCGAGCGAATCTCGGACTATTATTTTTGCGTGCTTTTGTTGCGGCACAATAGCGTGACAGAGTCCACTAATATGCTGATAGGGAAGGAATTGTTTCTGGAAGAACAAAGGAAAGCGATAATCAATACAAAGAAACCTGCTGTTCGACTTCCGCTGCTAAAGTCTGTGAGTTTAACAGGCTGCAGTGTTCCTACtaatattttcatttctcaGCAGAAACTTAAATACAAAGGAGCGAAGAAGCAGAAACATAAACAGGATTTATTCAGGACATACAGCAGAACTAAAAAAATTCCCGTTGGTTCTTTAGAGGAACTGTTCAAGCCGGGTAGAGACTCACCGGCCCCGAAAAGAATCCTCTTGACCGGGGCGCCAGGAATTGGCAAAACGGAGTTCGTAACGCAACTGGTGAGGGCATTCAATTCTGCCGAAAGTGGACTTTGCAAtcttaattttgttttcgtgttttATTTCAAAGAACTTGATCTTATCGATGATCTGATATCTTTGCACGACTTTCTCAATCACTCGCTGTTTTCTTCGAGATTGCGGGATATCGTGTATCAGGAGTTAGTGGCGAATCCAGAAGAAGTCCTCTTCATTTTTGATGGCCTCAATGAGTGGACGAAGTCTTCCGTTGAGCTCACAAACGTGGAAGAAAGCGAAGAGAAAATGTCGGTGTCTTCTATCATTTTAAAGCTTCTTTCCGGAGACCTTTTAAGAGGATCTACCATCGTTGTGACTTCGCGGCCAACACCCTTGCTCTCAGAGATTGAAGAAATTGTGTCATTCGACCGCCATGCAGAGCTTAGTTGTTTCAAGCCAGAGGGACTAAACACCTGCATCCAAGGGTTTTTACAACACAATAAAGAGCTTAGCATCACTGTGAAAAATCGGATTTCTAGCAATGAAAATGTAGACGTTCTTTGTCGTTTGCCTCAAAACTGCTTTCTACTTTGTTTATACTTTGACTTTCTGGCTTCAAAGAGAACACTAGAGGAAATTCAAACACTCGAGCTACCTTCATCGACAACAGCACTGTTCGACAGATTAGTTGAAATAGCAACAACGGCGGAATTGGATCAAAGTGACCACAAAACGTTTCCATCAGATCATTTTAATTTCTCAAAGAATTCTCAAGACGTCTTAGAAAAGCTCTCGTGTCTCGCATTCGAGGGAATAATAGACGAAAGATATATCTTTAGAAGGGAGGATTTCTCACACGCTGAACTTAGCGCTTTTGAGGTCGATATTCTTGAGGAGTCTGGCTTTCTACGTCGCTTGAGAGGCAATTTACCAAATCACACGGACGTATATTGCTTCAGCTGCCTTTCAATCCAGGAGTATCTTGCCGCAAGTAGAATTGTCCACTCTTCAACAACAAGTGAGTTCCGCGATTTTCTGGAAAAGGCCAATGAGAATCACTGCGCTACACTGCAATTCGTAGCTGGGCTGTGCAAAGACGGAAAGAAAGGCAAGGGGATTTTTGTGTGCTTGATGCAACACCTAACCGAAGCTATCAAGGTAAACAGTTTTGTCGACCAGCCAGTGATTGATAACCAAGCAATCGTCTTTTTGTGTAAATGCCTCTTCGAGAATGGGACAAAATTGGGTCACCCTTTTGCAAGAGAAGCAACCTCCTGCATAACGTCGAAGGCCATCGTTTTCACAGAGATAGGCACGAACCCGCAAGAAACTCAAGCGATTCTGTACTGTTTGAAAGAGGCCATTGGCAGCAATGTAAAGAAAGTCATCTTCGAGAGCAATGCTATAGAAGATAACGGATTCCGTCAGGTGGCCTCCACGATTTGCGAGGAATCTTGCAAGTTAGATCAAGTTAACCTTACAAGTTCAGGTATCACAGATGACGCTATGCTATCGTTTCTGGAAATAAGCGCACGTCACTCGTTCCTTGGAATAAAGATTCTCGGGTTGAGAGGCAACGATATATCCAGCGACGGGGCAAAATACCTCGCTTGCGTTCTCTTCAATGACTGGTGCCAACTGGAGGAGCTCCATCTTGGCAACAACAGAATCGGGGATTTGGGCGTTGAATATTTCAGCGAAGCCCTTTGCAGCGGAAGCAGTAGAATACACACTTTGGACTTGAGCTCGAACGGAATAACCCACAATGGTGTTTTTCATCTGAGCAGAGCTCTTAGCAGTCCAGTTTGTAATGTGAAACGACTTTACCTGCAGAGGAACAAAATTCTGGACTTTGGCATGCAAGACCTCTGCGAATCACTATGCACAACAGAATGCAATCTAAGGGTGCTATTCGCCAGTTCGAACGAGATCACCGACGACGGGATCATGTTTGTGGAGAAGGCCCTAGCACACAAGTCTTGTAACCTGCAAGAGCTCTACCTTGGCTACAATCTGGTCACTGACAAAGGAGTCAAAAGCTTACTACAAGCACTGCCTACTCAGCAAATCAACTTGAAGGTGTTGTCCCTGGCCAACAACCCAATTACAGATGTTGGCATAAAGATGTTAGCCACCGCCTTGAGAAACTCAAGCTGTAACCTGCACCGGCTCCGTATAAGTCTAGAACGAGTACAAGTAGCTGCTACGAAGGCTTCAAAGCTACAAGTTCGATACGTCAATGCATTCTAG

Transcript

BRAKERLUST00000028276

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
C3VPR6	Protein NLRC5 OS=Mus musculus OX=10090 GN=Nlrc5 PE=1 SV=2
Q86WI3	Protein NLRC5 OS=Homo sapiens OX=9606 GN=NLRC5 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011570 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17779 all species →	NOD2_WH	NOD2 winged helix domain	Domain	Interproscan
PF05729 all species →	NACHT	NACHT domain	Domain	Interproscan
PF13516 all species →	LRR_6	Leucine Rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050637 all species →	Family	NLRP family, innate immunity and inflammation regulators	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR038359 all species →	Homologous_superfamily	Connexin, N-terminal domain superfamily	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR007111 all species →	Domain	NACHT nucleoside triphosphatase	Interproscan
IPR041075 all species →	Domain	NOD2, winged helix domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45690 all species →	NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERLUSP00000028276.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.