Gene detail

Detailed information of BRAKERLUSP00000029315.1 in Blastomussa wellsi

Genomic Location: chr8:879562...887560
NR annotation: XP_020618720.1, allene oxide synthase-lipoxygenase protein-like isoform X2 [Orbicella faveolata]
Species Blastomussa wellsi · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERLUST00000029315

ATGCGTCAAAAACCCGACTCGTTTTACGACCAGCGGTTTTACACTGAATTAATCTTCGATTTCAAGGCGTTGGATGGAATAAAGCGTTACGTCAGATTCCGGTTGATGCCAGCTGACGGATCACCGGAAACAGGTTTACTCTCTGAGGAAGTCCAGTGGCAACCTTGGACAAATGAAAGATCAGCTACTGAGACGTTACCGATGGACTACCTCAAGCGAGAATACAGAGAGCGACTAACACGGGGTCCACTCGAGTACAAACTGCAGCTGCAGCTTCATGAGGCTAAGGTCGATGATCCACCAACGACACTTCACGTCGGGAGAGAATGGGACGAGAGGACGCATCCATGGCTAGATTTGGCTGACATCAAAATGACGTCATTACTTTCTCCAACAGCAACTGAGCGTTTAAAGTTTATTCATACAAATCTACCGTCTACGATTGGTTTATTACCAGCAAAGTCTAGTGATGACCCTAATTGTGTTGTTCACATTCGCAACGCGGTGTACGTTTGGTCTCAGAAGCTTCGCGCCAATAGATCAAACAAACTTGTCCCAGAGCACATGGCGTTCTATGTTATCCGAGTGGAAACTGGAAGCCAATCAGGAGCTGGAACGGATGCAAACATTTCCATTTCATTGACAGGAACCAAAGGAAAGACCGATCTGATCAAGTTAGACAACTGGGGTAATGACTTTGAACGAGGGGATGTGGATGAGTATTCTGTAGAAGCAATGGATGTCGGTAAAGTTCTTATGATTCATCTTCATAATGATGGTGGTGGCTGGTGGTACAAGAATCATGATTGGCTTGTTGACAAGATTTCGGTGCTAAGCTCTTCGCAGGAGGATCCATTCGAGTTTCCGTGTTATCGCTGGGTGTCATCAGATTTGGTTGTCTTTGAGGGCAAAGGTATTCTTCCTTTTCAAGACCAGCCAGATGTCGTTAGAAGCCAGCGAATTCTTGAACTGGAGCAGCGCCAAGAGAGTTATAAGTGGGGAATCCAAGGAGCCTTCCAACATCTTCCAGGTTATCTTGAAGCCTTGACGCACGCTGATATACCTAGAGATTCTCAATTCTCCAATGAAGCAAAAAAATCCATCAAGGACGACAAGCAAACGGTGACTCTCGATATCGGCCTCGCTTATTTGTCGACACTTTTCGACAGCTGGGATAATTTCGACGACTTCCAAAAGATTCTTGAGAGGGCGTATGGCGGTGTGCCGTGGATTGTCGAAGACGGCCGCTGGATGACCGATAAGGTGTTCGGTTCGATGTTCTTGAATGGATGCAACCCAAATACCATCCAGCGCTGTAACAAGTTGCCAGAAAACTTTCCTGTCACGGAAGACATGGTTAAAAGCTTTTTGGATCGGGGGAAAACATTGAATGAGGAGATAGAGGCAGGTCACGTGTACATTGTAGATTACAAGGAGCTTGAAGGTATCAACACCACAGGGGAGTCCACGTACATGGCACAGCCCCTGGGACTGTTTTATGTCAATGCCGCTGGTGACCTGGTACCCATTGCCATTCAACTTCTCCAGCAACCTAGCGACACGAACCCAATATGGACTCCTAGTGATGCACAATATGATTGGCTGCTGGCAAAGATGTGGCTGCGTCACGCTGACCATCAAATACAGCAGGGGAGCACTCATCTGCTCAGGACTCACTTGGTAATGGAAGCATTTGCTGTGGCTGCCTGGCGTCAACTACCATCGCTTCATCCAATCTTTCAAACTTTATTTCCACACCTTCGCTCCGTGATGGCAATCAATAACTTCATCCGAAACGACACCGCTGGCAATGAGGGAGCAATGCAGCTGCTGAAGAAAACTTACAAGTCGTTCAAGTTTGGAATGCTGTCGTTACCTGAGATGTTGAAAGAGAGAGGAGTGGATGATCCCGAGAAATTACCCAAGTTTTATTACAGAGATGATGCTCTCTGTTTGTGGCAAGCGATTATGGCTTTTATCACAGACGTCGTTGCCATCTACTACAAGTCAGATGATGACGTTGCCAAGGACAACGAGATTCAAGCGTGGGTTAAAGATATCCATGACAACGGATTTCCTGTGAGAGAGGATGACGTCGATCACGAGTTTCCAAAGAGCCTGGAAACACGTGATCAGCTGATCCACATGCTTACGTGCGTGGTGTTCACGTGTTCATGTCAGCACGCTGCAGTGAACTTTGGTCTGATGGACTTAGCAAGCTTCATTCCCAACACCCCTTCCCTGATGCGCCAACCGCCCCCCACCAAGAAAAATAAGGCAACTCTGAAGTCCATAATGGCGACACTCCCTAACAAATCGCAGGCTGTTCAGCAAATAGCTCTCATGTATGTGTTGACACGATTTGCTGAGGATGAGCGTTTCATTGGGGAAATTACACACAGCCTGTTGACTGGCGATGAAGCAGATGATGCAATCACTCGTTTCCAGGGCGCACTCCAGAAGATTTCGAATTCGATCAAGGCTCGCAATGAATCACTGGAGTTTCCTTACATCAATCTGTTACCCGAACGAATTCCAGATAGCATTGGTGTCTAA

Transcript

BRAKERLUST00000029315

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O16025	Allene oxide synthase-lipoxygenase protein OS=Plexaura homomalla OX=47982 PE=1 SV=1
P09917	Polyunsaturated fatty acid 5-lipoxygenase OS=Homo sapiens OX=9606 GN=ALOX5 PE=1 SV=2
P51399	Polyunsaturated fatty acid 5-lipoxygenase OS=Mesocricetus auratus OX=10036 GN=ALOX5 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000523 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00305 all species →	Lipoxygenase	Lipoxygenase	Domain	Interproscan
PF01477 all species →	PLAT	PLAT/LH2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001024 all species →	Domain	PLAT/LH2 domain	Interproscan
IPR001885 all species →	Family	Lipoxygenase, mammalian	Interproscan
IPR013819 all species →	Domain	Lipoxygenase, C-terminal	Interproscan
IPR020835 all species →	Homologous_superfamily	Catalase superfamily	Interproscan
IPR036392 all species →	Homologous_superfamily	PLAT/LH2 domain superfamily	Interproscan
IPR020833 all species →	Binding_site	Lipoxygenase, iron binding site	Interproscan
IPR000907 all species →	Family	Lipoxygenase	Interproscan
IPR036226 all species →	Homologous_superfamily	Lipoxigenase, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11771 all species →	LIPOXYGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0016702 all species →	Molecular Function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan
GO:0034440 all species →	Biological Process	lipid oxidation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERLUSP00000029315.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.