Genomic Location: chr8:19435603...19441537
NR annotation: XP_020626694.1, G2/mitotic-specific cyclin-A-like isoform X2 [Orbicella faveolata]
Species Blastomussa wellsi · all data for this species · gene families
| CDS |
| BRAKERLUST00000030181 |
| Transcript |
| BRAKERLUST00000030181 |
| Protein |
| BRAKERLUSP00000030181.1 |
| UniProt accession | Description |
|---|---|
| P24861 | G2/mitotic-specific cyclin-A OS=Patella vulgata OX=6465 PE=2 SV=1 |
| P51986 | G2/mitotic-specific cyclin-A (Fragment) OS=Hydra viridissima OX=6082 PE=2 SV=1 |
| P04962 | G2/mitotic-specific cyclin-A OS=Spisula solidissima OX=6584 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001000 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00134 all species → | Cyclin_N | Cyclin, N-terminal domain | Domain | Interproscan |
| PF16500 all species → | Cyclin_N2 | Cyclin-A N-terminal APC/C binding region | Disordered | Interproscan |
| PF02984 all species → | Cyclin_C | Cyclin, C-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036915 all species → | Homologous_superfamily | Cyclin-like superfamily | Interproscan |
| IPR006671 all species → | Domain | Cyclin, N-terminal | Interproscan |
| IPR039361 all species → | Family | Cyclin | Interproscan |
| IPR048258 all species → | Conserved_site | Cyclins, cyclin-box | Interproscan |
| IPR013763 all species → | Domain | Cyclin-like domain | Interproscan |
| IPR004367 all species → | Domain | Cyclin, C-terminal domain | Interproscan |
| IPR032447 all species → | Domain | Cyclin-A, N-terminal APC/C binding region | Interproscan |
| IPR046965 all species → | Family | Cyclin A/B-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10177 all species → | CYCLINS | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000079 all species → | Biological Process | regulation of cyclin-dependent protein serine/threonine kinase activity | Interproscan |
| GO:0000307 all species → | Cellular Component | cyclin-dependent protein kinase holoenzyme complex | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0016538 all species → | Molecular Function | cyclin-dependent protein serine/threonine kinase regulator activity | Interproscan |
| GO:0044772 all species → | Biological Process | mitotic cell cycle phase transition | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K06627 | CCNA; cyclin-A | - | Chromosome and associated proteins | ko03036 | deepkoala |
Genes whose expression across the transcriptome samples of Blastomussa wellsi tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Blastomussa wellsi, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
