Gene detail

Detailed information of BRAKERLUSP00000032075.1 in Blastomussa wellsi

Genomic Location: not available for this species
NR annotation: XP_020608943.1, probable RNA-dependent RNA polymerase 1 [Orbicella faveolata]
Species abbreviation BWELL · all data for this species · gene families

Sequence

CDS

BRAKERLUST00000032075

ATGGGATTTCCTTTCTTCGTCTCGCTACCGAATGGCGTCAGACCCCCAGAGCATCAAAACCAAGGGGAAGAAACACCACTATACATAAAACACGTGGAAATAAACGAGACGAAACCATGTTATGCTTCGTATAAGGAGGTCGAAAATTCCTTGTTACTTCGTTACCTGGTCAACACTCGTGGCAAAGAAGTTCTGGAGCAGCTGATGGTCATCAAATTTCACTCGAACGACAAAACCTTCATCGTGGAGACTTTAAAGAAAGGAATCGAATGTAACGGTTCCCAGTATCACTACTTGGGACAATCGACCTCCCAGCTTAGAAACAAGACTTGCTTCATGATGAACGCCTCGTTTAGTGACAGGCACAATTTACTAACGAAGTTTGAAATCTTTGATGAGATCTTTCCGATTGCAAGACGGTCTCTAGGGATTGCTCTACTCTTTTTGCCCTTCGAGCGCAGTCTGGAACTGAAATCCGGCGAATATGACGTCATTGATGACGTATCAAGTACAATAGGTACATATGTTTTCACGGATGGTTGCGGTCTTATGTCGCCAGATCTCGCTAAAGAAGTGCAAAGTTTGTACAACCTCTCGTATGTGCCTAGCGTCATTGAAGTGAGATTCAAAGTTTTCAGTGGTATCCTTGTACTTTTCAACGAAATGCCAAGTCTTCGAGTCAAGGCGCTGTTTAGAAACTCAATGTCGGAGTTAACAGCTTCTCGTGAAGGCATAAATCACATGAAAACATTTGGAGTAGTAGGCTTCTCGCGGCCATATTCGTTGGGTTACTTGGACACACAGACAGTGATGCTGCTGGCCGAAGGAGGTGTCTCGCACGATTATCTGGAGACACTTCAGAACAACTACTATGAAATGCTACATCGGTTGGAAGACAAGACTTATGCTGGTTACTTTTTACGAACAACGGGAAATGATGACTTGCTGCAAGCATTCCAGCGAGAAGGAATGACCGAAGAGATTGCGAGGAAGctgcaaagtttaaaaactaAGGAAATTCAAAACATGAAAAGAGggaaaatatttaatgaaaacGAAGAACCTGGCGATGAACAGCCATTGCAGTTTATGAAAGATGATGAAAAAGAAGCAGAGATGAAAGATCAAAACCATCTGAAAATGAAGGACGCTTTTACAGAGGATTCCAGCTCTACTTCTGGCGACGTACGCTTGAATAAAAACAAGAATCAAGCTTTTGATATCAGAATTTTAACACCAGACGCACGAGTGGTCTATGGAGCCAGCGATCCGTACGATCAGCTGAGATACGGAGAATGCTTCTTCCAGCCAACGATTCACGAAGCCGAGCGCAATGCCTTCTCCTTCGCCGAGCTCGTGCTGGTGATGAGAAGACCCTCGTATCACGCGGGTGATGTTCGTGTTTTAAAACTGACTCACGGGAATGAAGCTTATAGAGATCTGTACGATTGCATCGTGTTTCCTACCCGGGGGTCGCGACCACATGCTAATGAATGCGCCGGGGGTCGAGTGGGTGGTGACAAGTACTTCGTGTGCTGGGATCAGAAGCTCGTGCCACGTTTTATGAGCAACCCGTACATCGGCTACTTGTCAAGTTTTTCAACGAATATTGCAAACAAAGTAAAGGAAGTTGTTAAGAGCGTTAAGTGCATGGAGAAAAAGCAGGCCAGCGAtttacaagagaggaaaaagcAGCAAGAAGCATGCCAAGAACTAATAGAATATTTTGGACATTTTAAAGATAACGAAGAGTTGCGCTACCGCGCTACAGAGCTATTTATCAAGTACGCGTCGTTATTTGGTTCGTCGTGTACCGAATGCGAGCAGctcaagaatttttttctgagagAGTTCGAATGGAGTGAGCGATATGATCAATTTAGCAAGAGGCTGAGAGAACTGGAAGAAGTTCACGACAAAGAAATTAAGGGACTCACCAAAGTTTCCCACACAGCGCAGTTCTATTCGTCATCCCGACATCCCGGTGTACTAGATCGTCTTTTAATCTCGCTGCAGTACaaaaagccgccattttgtccTGGAGATGACGTCTGGAATAAGATGAAGGAGAAAAGCGTCATGTTTGTGGAATCACAAACAGCCactgaaatttaa

Transcript

BRAKERLUST00000032075

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0DXS3	Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR1 PE=2 SV=2
O82504	RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=RDR2 PE=1 SV=1
Q9SG02	RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana OX=3702 GN=RDR6 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001327 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05183 all species →	RdRP	RNA dependent RNA polymerase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007855 all species →	Family	RNA-dependent RNA polymerase, eukaryotic-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23079 all species →	RNA-DEPENDENT RNA POLYMERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003968 all species →	Molecular Function	RNA-dependent RNA polymerase activity	Interproscan
GO:0030422 all species →	Biological Process	siRNA processing	Interproscan
GO:0031380 all species →	Cellular Component	nuclear RNA-directed RNA polymerase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11699	RDR, RDRP; RNA-dependent RNA polymerase	EC:2.7.7.48	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.