Gene detail

Detailed information of BRAKERMNPP00000002256.1 in Nemopilema nomurai

Genomic Location: :...
NR annotation: XP_012557432.1, armadillo repeat-containing protein 8 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERMNPT00000002256

ATGGCCGATTCAACCATGAAAGAAAGTGTTGCTGTTTTTCTGAAAGGGATTGACAGGTACAACCCAGAAAACTTGTCATCCCTAGAGCATTATGTACAAATGCAGGCAATCGAAAATACATACAATCTAGATGCAAACTTGGCAATTCTAAAATTGTACCAGTTCAACCCATcccttttcaaagaaactgtCACATGTCAGATTCTGCTGAAAGCTTTGATGAACTTACCACAAACTGATTTTACATTATGCAGATGTTTGATCAGTGAAAATTTTCATGAGCTGCCTTCAATATCAAAGGTAACAGAGCTTTCAAACAAGCTTGAAATGTGCGAATTTAGGGAGTTCTGGAGAGAGCTTGAAGAGTCAAAAGAGCTGATAGGAGGGATCAAAGGATTTGAAGATTCAATAAAAAAGTTTATTGTGTCTGTGCTAAATGTCACATTCCAGCTGATAGACAAAGTTCAGCTCATGGAGATGCTTGGGAATCTTTCAGagGATGACCTTAAAAAGATGTGCCTAGAACAGCAATGGCAAATAACTGGTGATCAAGTTTTCATTGCAAACCAGGAAGAgcatatcaaatcaaaaaacATCACTGAAAAAATTACCTTTGAAAGTAAGTTTTCCTATATCACGGATTATGAGTGCTCGCTGATTGAGCAACTCAAATCAGATGATGTTGCATGTCAACTTGAAGCTATAAGGAGCATTAAAAATGCTGTCATTGGAATCAAGAGCAAAAAATCAGCATTCATTGCAAATGGGTTAATTCCAAGGCTACTTGAACTTATGGTTAGCAGCAATGCCAGTGTGGAGTTTGCAGTTGAAGGAGCAGCTATCTTAGGGAGCTTTGCAAGAGGAACACCAAACGATTTAAGGGTGATGATGGACTCAAGAACTATTCCAATACTTTGCAGAGgCCTTTGTCAAGACAGTTCACAGCTGGCAGTGGCATGCTTGAGGTCTTTAAGAGCCTACTTTGTAACTGGTGAAGTTCCACCTGATATCATTTATGAAGATCCTTCCATTGTTTGTTGTTTGGTGCAGTTTTTATCACAGTCACCAACAGAAGCAGAATGTGCTGGAAATATCCTCTTTCGTTGTTGCAAGACAACTGAGCACCAAGTAATGTTATCTGAAGCTGGAATAATTCCTGCATTGGCTCCCTGGCTTAAATTTGAGAAGCCTGCTGTGATTCTGCCAATTTTGTGCTGTTTTTCAGCCCTAGTTTTAGACAATGAAATCTTGGCGCGATGGGTCAGTGAAACTTGTTTGGGGCAAAAGAAGGTTAAAGACTTGCTTATAAACTTGCTGTCAAGAGATAAGCCAGATGAGATACAGCTTGCAGCTGCAAAGTGCTTGGCAAATTTTTATAGAGCTGGGTCTTTACATGTCACTGATGAGGTCATTCATTCCAAGGTTCTATCCACATTTGTAAGAATGTGTGCAAAGAACAAGCCAAACAATATCCGTGTTCCTGCATCACAAGCTCTAGCCTTTCTGATCGAAGAGGATAGTGATCTACAGCAGCTTGCTTCGATATCAAACCACctcattcaaaatattgcaagcTTTTTACACCCCGATGAAGATTTGGACGAAATGACAGATCAAGGATTAAAAgagGGGGCATTTAAAGTCTTCGGTGCATTAGCTGCTAATGATGAAAAGATACGAAAGAGGGTCGTTGATGCCACTGACAAGCTGAACCCAGCTCTGAATTCGGCACTGCAAAGTGAATGCAACGCCCTGCAAACGGCCGCACTGCAATGTCTCTTGAGTCTGTCACGGTCCGTCCAGCAACTGAGATCCACGTTCAAGGACCAGTCGATTTGGCAGAGAATTCTCGACATCTTGCAGACAAGCCACTGTGAAGACCTTCTCAGCACCGCATCGTCTGTTCTCTGCAATTTGCTTCTGGACTTTTCCCCATGTAAAGATCTTATGCTGGACAAAGGCGTTCTGGAGATTCTAACTGCATTGACGAAAAGACCAGAGGCTCCTTTGCGTGTGAATGGCGCATGGGGATTGATGAATCTTTCCTATGATGCTGATGAGAATATTAAAGCCAGAATCTTAAAAGATGTTTCGCTGCGGCATCTTATACATCTCCTTGAAGACCCGGATATTCACGTGACTGTAAAAATTCTTGGTCTCTTGCGTAACCTATTGTCAGGAAAAGAGGGTATGGATGAAGTGATAGAGGATGGCTGTGCGCAGTTCATTGCTGCTGTTAGAAATGTGATTAGTAATACCAGCATTGCAAATGATATCAAAGACCAAGCTCTTTGCGTGCTCTGCAACGTGGTGAACAGCAAAACTGGTAAAGACCACATAATGAAAGACGAGGAGCTCCTGCGGAAGTTGATCAGTTGTCTTTCCAATGAGAACCAAAGAATTCAACTCGCATCCGTGTCGTGTATACTTAATTTATCATGCAACAGCGAAGAAGGCGCCCTCGAAAGGCAAACCAAGCTGCGAGACCTTGGAGCCCAGAAACAGCTGCAATCCCTGTTAACCACGCCGAATATCAATTTGTTTGACAAAGTGAAAGTTGCACTGCAGCAGTTCTCGTGA

Transcript

BRAKERMNPT00000002256

Protein

Uniprot

Uniprot term	Description
Q05AL1	Armadillo repeat-containing protein 8 OS=Danio rerio OX=7955 GN=armc8 PE=2 SV=1
Q2KI54	Armadillo repeat-containing protein 8 OS=Bos taurus OX=9913 GN=ARMC8 PE=2 SV=1
Q8IUR7	Armadillo repeat-containing protein 8 OS=Homo sapiens OX=9606 GN=ARMC8 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10075	CSN8_PSD8_EIF3K	CSN8/PSMD8/EIF3K family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016020	Homologous_superfamily	Translation initiation factor 3, subunit 12, N-terminal, eukaryotic	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR000717	Domain	Proteasome component (PCI) domain	Interproscan
IPR033464	Domain	CSN8/PSMD8/EIF3K	Interproscan
IPR009374	Family	Eukaryotic translation initiation factor 3 subunit K	Interproscan
IPR000225	Repeat	Armadillo	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR038739	Family	Armadillo-type fold containing protein ARMC8/Vid28	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15651	ARMADILLO REPEAT-CONTAINING PROTEIN 8	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003743	Molecular Function	translation initiation factor activity	Interproscan
GO:0005852	Cellular Component	eukaryotic translation initiation factor 3 complex	Interproscan
GO:0006446	Biological Process	regulation of translational initiation	Interproscan
GO:0043022	Molecular Function	ribosome binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0034657	Cellular Component	GID complex	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K23336	ARMC8; armadillo repeat-containing protein 8	-	Ubiquitin system	ko04121	deepkoala