Gene detail

Detailed information of BRAKERMNPP00000007971.1 in Nemopilema nomurai

Genomic Location: :...
NR annotation: XP_032231369.2, fibropellin-1 isoform X1 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERMNPT00000007971

ATGCATCATCTTAACGCCCTAAAGCTGGTTCTTTTTGGCGTCTTTTTACCAAAGGCCGTTTTCAGTGCTGTCATAGTGACAATACAACCTATTGATTATTACAACCGTGGACACAAAGATTACGACGGAGTGTGCTGTGACAATCTCGGAAGCTGGTGGTGTTTCAATGAATGCGAAAACTGGTTTGAGTTCTGCATCACTACGTTCCCCGTGAAGGACTTCAGCAAGTGCCAGATTTATAAGACCACGTACGTCCTGGGTGACGATGAATTCACGCTGCCTGGATTCGGTCACAAGCTTGGCAACAATTTTTACAGTCCATTACGCTGGGAAGCGGTCGATCGCTGGCCGGGCGCATTCGGCTTGCTAGGCAAAGTCTGGGATGATGATCATAACAACTTTCTCGGTATTGGTAGAGCTGATGATAAAATTGACGAATATAGAATGAATGTTTATATGGGTGCAGGGCGAGACGAAAGTCGCGCAGTTACAAAGCGCTTCTACGCAGGAGGGAGACGATCGAGTCTTGGTTTTCTTGCTAGAGCATGGTGTGCCAAGGACTTCTATGGCCCCGATTGCTTCACCCACTGCGTGGCCAAAGACGACTCAACTGGACATTACACATGTGATCCTGCTACTGGCAGTAAACAATGCAAGACTGGATGGAAAGGAAGCAACTGTCATTTACCTATTTGCCTTTCTGGCTGCGACTTGTCCCACGCATCCTGCAATTTGCCCGACCAATGCAATTGTGTTACTGGCTGGACTGGAATCTACTGTAACAAATGCATCAAGAAGACAGGATGTGTGAACGGATACTGTGTAACTGGGCTTGACTGTGTATGCAACAATGAGTGGACTGGTAGCAACTGTGACCAAGATTCAAACAAATGTCGAAGCGGCCCATGTCGAAATGGTGGAACCTGTTCAAATACCGGACCAGATACATTCAGCTGCACTTGCGTACCTGGCTACACTGGAACTTTGTGCGAAACCGAGATCAACATGTGTGCCCCTGACCCATGTCTAAACGGAGCTACTTGCGTCAACCGAAGAACTGATTATTACTGTTCCTGTATTCCCGGATATGATGGCAAAAACTGTCAAACAGATATCAACGAGTGTGCTTCTAATCCATGCCAAAACGGTGGTACTTGTAAGGACCAGGTGAACGATTTCGAATGCACTTGCGTGGCTGGGTATACCGGCAAAGACTGTAGCACGAATATCAATGAATGTAGCAGCAATCCTTGTCAGAATGGGGGCCAGTGTGTTGATGGCATCAATTCATACTCCTGTCGTTGCCGGGCTGGTTTCAATGGAAGCAACTGCGAAGTCAATATTGATGATTGTAATCCGAATCCTTGCAAGAACGGCGGAACATGCACCGACGGAGTGAACACTTTCACCTGCAATTGTCCGTCCGGATTCCATGGCCAGACATGTCACAATGGCACCAACGAATGTGACCCAAACCCGTGCCAAAATGGTGGTGCCTGCACTGATATTCATCTTGATTACAATTGCACATGCGTTGCTGGGTACACGGGTAAAAGCTGCCAAACCGACATTAACGAATGCCTGGCGGGGATTTGCAACAACGGGACGTGCACGGACAGAGTCAACGCATACTCCTGCGCATGCTACCCAGGATTCACTGGCAGCAATTGCGAGACCAACGTCAACGAATGCACTTCAAGTCCTTGTCAAAACGGTGGCACATGTGTGGATGGCGTCAACAGCTTCGCTTGCCGATGTCCACTTGGTTACACAGGCGTGCGCTGCGAAACTAATATTGACGAATGCAGCTCCAATCCGTGCATCAAAGGAAGCTGTTTGGATGGCATTGCAAACTACACCTGTAACTGCAGCATGGGCTATCAAGGACGGAACTGCGAGGAACGAATCGACTACTGCCAATCCAGCCCTTGCAACAACTCTGGCAGATGCGTGAATGAACTTTCTGGTTTCAGATGTGTTTGTGCGGTGGGTTATACTGGAAGAACCTGTGGTATTAATATTGACGACTGCTCCCCGAATCCATGCAACGTTACGGGCACCAAAGCCTGTGTCGATGGCATCAACAGCTACAAATGTGACTGCATCAAAGGGTACACTGGAACCTTGTGTGAAGTTGACGTTGATGATTGTGATCCTGGGAACATTGACAATGCGATCGAAGGAGAAGGTGCGATCACGGAGTTTGGCTTTTGTGGCAAGCACGGCAAATGCATCGATGGCATCGCCTCATACAACTGTAGTTGCGACAAGGGCTGGACAGGAACCAAGTGCAATATAGACATAAACGAGTGTCAGCCGAACCCTTGCCAGAACGgaggaaaatgttttcaaacatACAACGCGGATTACACCTGCGAGTGTCCTAGTGGATTCACGGGAAAAAATTGCTCCATAAATATTGATGATTGCGTCAATCACCGTTGCTGCAATGGCTCAAAATGCATTGACGGCATCAACAGCTACAGCTGCCAGTGTGCTTTTGGCAAGAAAGGCATCGATTGTTGTTCTGCTACCTCTTGGTGTGCGAATAACAACACTTGCATCAACCAGAGGGGGCGCTGCATTGACCTGGGAACTGATTTCCGCTGCAACTGTTCAACCGGGTACACAGGCAGGAGATGCGAAACTGTTTTGGACCTGTGCCAGAGTAGTCCCTGCAGCAGCAGCTCCACTTGCCTGTCAATAGTGGGCGGGTACAGGTGTCTGTGTAACTTTGGCAAGACAGGCAAAAAGTGTGACATCGATATTGATGACTGCTTCAATAACACGTGCAAAAACGGCGCCACATGCGTAGACGGAGTCGGCCAGTTCACGTGCACATGCCCTCCCGGAGGAGGATATACTGGCCCATTTTGTGACGACATTGACGAGTGTGCGCTGGGTGCATGCAAGGAGCCAAACCAGAAGTGTGTCAACACACCCGGAAGTTATCGGTGTCACTGCAAGGCTGGGTACAGCGGAGCAAAATGCGAGACAAATATGGACAACTGCAACCCAAGCCCGTGCGACTCTGAACGGTCGACGAGCTGCATTGATCTTGTTAATGATTACGAATGCACATGTTTGAAGGGTTGGCAAGGAAGAAACTGTACATCAAGAAAATCTGGCGAGGACCCTTGTGGCTGCAAGAATGGTGTTTGTTTGTTGCGAAATGGATTTGAAACGTGTGTATGTAAGCAAGGATTTAGAGGATCGAAATGCGAAATAGATGTGAAGAAAGAAGCTGAAGACAATAAACAGAAGCTGAATATCACACTTGGCGCCGTTGGAGGTGTGATTGGTGTTATCGTGGGAATAGTGGCTGTTTTGATCTACATGAAATGTAAACAGAGACAAACGCCGCCTCCAGAAAAACGCGTTGCATATTCAAACATGGACGGAGAGCATGTGGATTTCAAAGGAGGAGACTTGATGTACAAAAATCCCACCTACAGTTTGGGCAGAGCGAACCTAGGCCTCGATGATGAAAACTAA

Transcript

BRAKERMNPT00000007971

Protein

Uniprot

Uniprot term	Description
P78504	Protein jagged-1 OS=Homo sapiens OX=9606 GN=JAG1 PE=1 SV=3
Q9QXX0	Protein jagged-1 OS=Mus musculus OX=10090 GN=Jag1 PE=1 SV=1
Q63722	Protein jagged-1 OS=Rattus norvegicus OX=10116 GN=Jag1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008	EGF	EGF-like domain	Domain	Interproscan
PF01414	DSL	Delta serrate ligand	Domain	Interproscan
PF12661	hEGF	Human growth factor-like EGF	Domain	Interproscan
PF07645	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742	Domain	EGF-like domain	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR001774	Domain	Delta/Serrate/lag-2 (DSL) protein	Interproscan
IPR051022	Family	Notch Signaling and Cell Fate Determination	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR013032	Conserved_site	EGF-like, conserved site	Interproscan
IPR049883	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24049	CRUMBS FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0007154	Biological Process	cell communication	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007157	Biological Process	heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules	Interproscan
GO:0032991	Cellular Component	protein-containing complex	Interproscan
GO:0045197	Biological Process	establishment or maintenance of epithelial cell apical/basal polarity	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan