Gene detail

Detailed information of BRAKERMNPP00000010440.1 in Nemopilema nomurai

Genomic Location: :...
NR annotation: XP_023932198.1, nephrocystin-3-like [Lingula anatina]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERMNPT00000010440

ATGGGAAACACAAGCTCCATTTTCCGCTCGAATAAAGTAAGAAATGGACGAGCAAGGACGACGGACTCGGAGAACGAAGCAATAGGCCATGATAGATTTGCAACTGATCATGAAGTTCGTGTTCCTGTCGACTATCCTTCGAAAAACAGAAGGCCGTTATCGATATCGTTAAAATCAATTGGCTCATTTCGTATACGGAAAAACAGAGGGACTGCGATACGAGAAACTACAAGTTTGCAGTCCGCTTTCTCTGTTCGTTTGGATCCGGAAACCGAGAAATTGAGAAAGGATTTTGACAAATGTAAATCTGAAAGAGAAGCTGAAACTAGCATGCTAACAAAACAGTGTGAAATGACGATGAATGAGAATAGGAGACTTCGAGgggaattgaaaattttgcagaCAACTTGCACGAAGTTGAAGCGGGAAAGAGACAGAGCACTAGTCGCAGAAAGAGATGCGTTGGAACGATCATCTGCAATTGAAGCAGAAAGAGACAAAGTCCAGCGGCAGTTCAAGTTGTTTAGAGATACAAAGGCCAATGAACTTCAAACATTACTGAAAGAAAAGTGCCATCTTGAAACTCGTTTGATGAAATATGTTAACATTCATGAAACAGAGACTGAGAGCAATCCAGTGGGGCATGAATTTTTTGGTGAGGGTGGGGAAATTTTGGGAAACATAAATGATATTGCCAATGCTGTTGCTGCATTTGATATTGAGTCAACTGCTGGTGTCAGCAATCCATTAGCTTTTAAAGGAGTGGAACATAGCCACTTTGGAAGTGAAAATGAGCCTTACACAAATATCAGAAAAGGTGATTGGGATTCAGTTGTCCAAAACTTAATCAAGtcattgaatgcaagtatcATGAGCATTCCAGTTAACAATATATACAAAATTTACATCGCATCAAGTGATGATGTCGCAGATGAATGTGATTTACTAATGGAGcaATATTGCCCAAAACTAATGCAGCAGTGTGAGTTAGAAGGGCGGTTTCTACTGATGCAGCACATTTCAAACAAAGCTTGGACTAAAGCAACTGAAAAGGATTTGGATAAAAGTCTGTCAAACAGAAATAAACTTGTGGAAGAATGTGATGTGTTCATTTGCCTCTTGGGGGCTGAAATAAGCGAcatCACTTTGGAGGACATCAGAGTAGGTGTGAAGCGAAAAACAGGGATCAAATACAATATATTTTGCATTCAAggtgaaagaaatgaaaatgaAGTTGAATCTCTTCTTGGACATGATTTATGGGAGGATATTAACTTGAGTAACCGAACAACGTTCCTCATGGAGCAGCCAGATTATAGCATGGGGACGTCTTCAAATGCTGAGGATGGTGACTGTTTATCCATGTGTGGATGGGACATTTACGGTGATTTTGAGCAGCGGGAGGCCTTGAAATATCATATCAATGAACACGCTAATGCCCCAAGACTTCAACAGTACTTTGAACAGCTCAATGAGCATGTCACATTTGATGGCCCAGTTCAACCTTTACTTGTCACGGGTCCAAGTGGTTCTGGCAAGTCCTTCCTGCTATCTAGATGGATTCAAACACAGCAAGCTGAAATGACCGGAGCCTGTTTGCTGTATCACTTCGTTGGGGCCCCTTCTACCTTCAGTGCTGATCTCGTCCAAATCATGAGAAGGTTTACGTTGCAGATGCTGCAACAACCACCTTCCACGTGTAATCCTTCAAAACTAGATGAAGATTTCCCAAAGTTTCTGGATCGAGCGATTTCCCGATACCCAAATGGCATCACTTTAGTTATTGACAATGCTGATAATCTTCAGGgcttgaataaatttttgaagtggGTACTGGACCCATTGCCTGTCGGTTGTCGAGTTGTGTTATCTGTTGGCACAGACAAGTATCCTAGTGAATGGAGGTCCTTACCAATGCTGGAAATAAAGCCATTTGAAGAAGAGGAAGCCAAGGACTTTATGCGTTCTCTCTGGATGAACCAAAAGATATCATTGTCAGCGGATCTGGATTTGACGGAACTTTATTTAGTAATGATCGAAGACCTAGAAGATCAATACGGAATAACATATTTAAAAAACGTTCTCACTCATGTGTACTTCTCAAGAAATGGCCTAGTCGAGGCTGAGCTGATGCAGTTGTTCGATATTCCATTGCTCACATGGGTGCAGATGATGAATGAATTCTCTGATCGTGCATTTTTCACCACTTTTGGTGGATTTGTTTGTTTCGCTAATAGAAAGGTCATTAATGCTGTTGCGAAGTACTACAATCTTGTTGAGAACAGAGAGGAGGTGGTGTCTGTGCGAGAGAACCTGATTCAGTACTTCCAAGTCAAGAACATACCTGGGAAGGTTTCGTTCCGCGTTGCCGATGAGCTCCCATGGCTTCTCCTACAAAGTGGGCGGCTGGACACCCTGAAGGACGTCATCAGCAGCATCACGATATTCGTTTGCTTATTCAGAAAGGGACGTATAGCTGAGCTGATTGGCTATTGGAAGAACGTCAATCTAGATGTATCCGCTATGGCAAATTGCTACTATGACTCCATTAAACTAATGGAAAACGATCCAGTCTTTGGGGTGAAAGCATCTTTGCTGTACGATACACTGGGGAAATTCCTTCGAGAGCTCGGTCTTTTGTCTCAGGCTCTACGACCTTTGGAACGAAGCCTGGAGCTTCGAGAGTCGTCCTTGGACCCTGATGACCCAAGTATCGGCCAGTCGTTCCACCATTTGGGGGGTCTGTACACGCAATGGAAGAAATTCAGTACGGCAGAGACCATGTTCAAGCAGGCCTTGGAAATCAAAGAGAATGCCTACGGACCAGATCATCCTTCTGTGGCAAAGGAGCTGGAAGCGTTGGCAGTTCTCTATCTCATACAAGAGAAAACGTCAATGGCAGAGCCACTTCGTAAAAGGGCTTCACAGATTAATCAGAGGTCCAACAGAGAACATTCTGCTAGTTCATCTACAAAGATCTTGAAACGATGTGGTGAGGAGATCTTTGATATTGCGGAGAAGAACTCATCAGCTGAGATTGGAAAGTCTCTAAACGATCTtggagttttgttttttattcaaaacaacaatGAATTAGCGAAATCCTTCTTCATGCGTGCCTTGGGAATGAGAGAGACCTTATTTGGCCAAGAGCACCCAGACGTTGCTCAATCACTCCACAACCTAGCTGCTCTTTATAATGACCAAAAAATgtACAACGAGGCTGAAGAACTATATGAGAAGGCATTAGAAATCCGTCGAATGAATTTTGCATTGGAAAACCCAAGTGTGCAATCAACTTTAAGGCATTTAGCTGGCTTGTATCGTAAACAGggcaaatttgaagaagcaaaaaaaCTTTATGGGGAAATACTAGAGATCAGAGAAAAGAGTCTTGGGGAGCATCACCCAAGTGTTGCAACAGCTGTTAACAATTTAGCTGTTTTAATGTGCCAAATGAGCAGGCATCAAGAGGCACTTCCATTGTTTGAAAGAGCAATTAAAATATATGAAGAACATGTTGGAATACAACACCCCAGAGTATCtgaaatcttgcaaaacatGGCAAAACTTTATCTAGATGCAgGTGAAACACAAGAGGCTGCAAAGCTTTTCAAACAAGCATTAGATCAAGGGCGTAGTGTCTATCATCCTCCATCTCATTTACCACGCTCTGTGGCAAGAATAAAAGAAAGTGAATCTGATTCTAAACTCAAGGAGATTGGATCTCGGAGGTCTTCCTTTTCCTCCATTGTGAGAATTCAGAATCCCTCTTGA

Transcript

BRAKERMNPT00000010440

Protein

Uniprot

Uniprot term	Description
Q7Z494	Nephrocystin-3 OS=Homo sapiens OX=9606 GN=NPHP3 PE=1 SV=1
Q7TNH6	Nephrocystin-3 OS=Mus musculus OX=10090 GN=Nphp3 PE=1 SV=2
P0CI65	Nephrocystin-3 OS=Danio rerio OX=7955 GN=nphp3 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13176	TPR_7	Tetratricopeptide repeat	Repeat	Interproscan
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF13401	AAA_22	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR051787	Family	Effector and Ciliary Development-Associated Protein	Interproscan
IPR049945	Domain	ORC1/DEAH AAA+ ATPase domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45641	TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19360	NPHP3; nephrocystin-3	-	Cilium and associated proteins	ko03037	deepkoala