Gene detail

Detailed information of BRAKERMNPP00000010563.1 in Nemopilema nomurai

Genomic Location: :...
NR annotation: XP_048576898.1, ATP-dependent RNA helicase DDX1-like [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERMNPT00000010563

ATGGAGGTTGGAGTAGCTGGGAGGAAACTGGTGTTTGCAGTCAGGCATGCGGAGGAGGAGACTTCGTGCAACGCCGTTATTGCGATAATCCAAGGCCCGAATTTGATGGCAAATTTTGCGAAGGAAGTCCATACAAGAAGCGACCGTGCAATAATCACAAATGCCAAGGTTATTGCTGCTTACAAAAATGCGTCTTTTGTGTCGGGTATCAGAGTGTTAAGCTTCAGCAAAGAGTTTGTTGTCGCCAATATTGGCGTCTTCTACTCGCAAGTATCCCAAACCGAAGTTATTTACTTACAAGACTATGTTGCATCAACGCATCGAGTGTTTGAGCTGAACGTTTCTCTCAGTGATGTCGAGTCACAAAATGTTCTTCCGCGACCTCCAGAGAATCTGACAGCAAGCCATATTGATCCTCATACCATCACCTTTTGCTGGGATCCTCCAAAGAACATAAGCACTAAATTCAACACCACAAGTTACTATCTGTATTACCGTGAAATGCATTCGGACATTGGCGCTTGGGAGGTCCGAGGGATCCCGCTCAACTATACATGCTTCACTGCAACCCGTTTGAAGGCGACAACCTTTTACAGAGTACGGATGACAATCTCGATTACTCATGCGAATGGACTTGCCACTAAGGAACTGCTGGTGAAAACACTGCAAGGAAAACCAAGTTTCGCTCCTACTCATTTGAAACTGCGACCGATCGGTCCAACAAAGATTTATGTACAGTGGAGTCCGATTGCAACTTACGACTTCAATGGCATTCCTCTTGGTTACATCGTGTCCTACAAGAATTATCGAGAACCTAGTTATCAGCAAACCAAAGTAGCTTATGGTGCATCTGATGTGATATTAGAAAATCTAGAGCCATTCCAAATCTACGTCATAATCGTACGAGCGCACACAGTTGTCGGGGAAGGACCAGGTGTTACCAACGCCACGAAAACTCCAGAGGGAGCTCCATCAGTTCCACCTCCAAACACCCGAGTGCGACAGAAGTACTCACTGGACGAAGTGACCGTCACGTGGGACGCAATTCCAAAAGAAAAAGTGAACGGCCAATTGAGAGGATACATAGTTAGATACGTGAAAACTCAAGTGTCCACTGAAGATGTCGTGGTAACTGATAGTGACATCAAAAAGGTTGTTCTCGACAAATACACGCTAAGGCTGAAGATCACTGGCCTTCTCAGCTACACAACATATGCAGTATCGGTGTGTGGCTTTACTGCGGCTGGCAGTGGTCCCTATTCGAAGCCAATTTCATCAAAAACGTGTAAATGTCCAGATAACATCTTTGTGAATTGGTACGAAAAGAAACCTTAccttttgaaaagcaagagTGGGAGGATCTCAGGGCTGTTCAAAAAGATTACAGACGACATGATAAGCAAGTCCTGTGGCACCTGTGACGGGGTTGCTCCCACAGTGAACTACTACGTCGGTCCCATTGGGGGAAGACCAGACAAGTCAAGTGAAGATGAATGCATTGCGGCCCTTGCAAAAGGCTACCACATAACGTTTCCGGTGTTTGGCAGATCAGAAAATCGCAACTTCATGGACGGCCACATTTTTGTGCTGCTTGTTCACTCTGGGGGAAGTGCAATGATTATTAGTGGAACAATTGACTATGCCGCTAAAACTTTGAATGCTCTGAAGTCAGTGAAATCAGCCTGGCCTATGGTGCTGATCTCAATTCTAATGAGCATCATTTTTGGTATTCTGCTCTGGTCTGTTgaGCAATTCCAAAATGACCAATTCTCTCGTGGACGATACATTTGTGGCGTGTGTCAAGGCTTGTGGTGGGCCTTTGTTTCCATGACTACTGTTGGATATGGAGACGTTACACCACAAACATTCCTTGGAAGAATAGTCGGCATAGCCTGGACGTTGATTGGACTAGTCCTGATCGGAATCCTCACTGGCGCTTTGACATCGACTGTCACTACACTGACAATAACACCATCAGCCACTCTGTACGATACGAATGCAGCCGTTATCAACAATTCATTCGAACACGGTCTGGCTGTACGAAGAAACGCCAGGGTTTTACCAGATATGAGGTTTGGAACTGCACCAGAGGTGCTGtctgctttgaaaaagaagcaagttGATGTGGCTCTTCTCGACGCCTTTGAAACTGCGAGCTACACTTCCACTATCAATGAACTCAATCTCAAAGTGAAGAAGCTTATTGCTAGCACTGCTGGCTTTGGTTTCGTTCTTTCCAAGGAGCTTGTCCGTCTCGAAAGTGACTTCAAGAGCCACATTTCCTCCGAACAATTCAGGATCACAGGGTTCGTTGCCAACATGACAAGCAAGCTAGAGCTTTCAAATGAGAAGCCACCTGACATTAAGCTGTTTGATCCAAAGACCCCTTCATTTTGGTTGGTTCTAAATTTCGAACTGTATTTGCTCGGAATCTTGACATTCCTTGGCATCCTTTGGACAGTGTTCAGAGAGCTAAGGAAACGCAAAAAGGTTCATCCAAACGTGGagTTTGGGCTTCTCCCAGAGCTTGTTCAAGGCATTGAAGAGATTGGTTGGATGTTACCAACTGATATCCAAGCAGAGGCTATTCCTTTGATTCTTGGTGGAGGTGATGTTTTGATGGCAGCAGAAACAGGAAGTGGGAAGACAGGAGCATTCTGTTTGCCAGTGATTCAGGTTGCACATGAAACTCTGAGAGATGCCAAACAAGGAAAAAGAGTTGTTGTTAATCAAGGCAGTGGTGCTGCAAAATGGGTTATGAGTTCAAATGACAGAGAACCATCCTTTGGCAAATGGTACTATGAAGCGACAGTGACAGATGAAGGCCTCTGCAGGGTAGGATATTCAACAGCCAAAGCTACGTTCGATGTTGGGACGGATAGGGAAAGCTTCGGATTTGGAGGAACGGGAAAGAAGTCTTATTCGAGACAGTTTGATTCCTATGGGGAGCCATATGGATTTAAAGATACCCTCGGCTGCTACATCGATCTCGATGATTACACTATAATGTACAGCAAAAATGGAAATCTACTAGGAAGAGCCTTCGATATTCCCAGAAATCTGCAAGGAGCTGCCTTCTTTCCCTCAGTCACATTAAAGAATGCCGAAATGAAGTTCAATTTTGGCGATCAACCATTTGTGAGCAATCCAATCTCAGGCTATGCTGGAATATCGAAAGCTCCGAAGGATGTCGTCAAAAGATCACAACAAGCTGCTGCAACTCCAGAAAAGTTTACCAATATATCCTCGCCTTCGTGCGTAATAATGGAGccATCAAGAGAGCTTGCAATTCAGACAAACGAAAACATAAAGCATTTCACGAAGTACATTCCCGACCCCCGACCAACGTGCACAGTTCTCGTTGGTGGTGGTGACGCGCGAGAGATGATCAGAGACTTGGAGAGTGGGATCGATATTGTAACAGGCACACCTGGAAAGCTGATCGACTTTATATCCACCGGCAAGCTAAAATTGGATCAGGTCCGATTTTTCATTCTGGATGAAGTTGATGGGCTACTTGCACAAAATCAGTCAGAAACAATCCAGTCAATATTCAGCAAATGCCCGAAGACGTCTGTGGACGGAAAGAGATTGCAGATGATCGTTTGCTCAGCAACCCTCCATAActttgatgtaaaaaagtTAGCAGAGAAACTTATGCACTTCCCTACGTGGATTGATCTTAAAGGACAAGATTCAGTTCCTGACACAGTCCACCATGCTgTCTGTAGAGTGGATCCTACCAAGGACAAGAGCTGGATCAATCTAAAATACCCAGTAAAGACAGATGGTATACATGAAAAGGATAAGCTCAATCCTAAAAGTCTAACCCCAGAAATGAAATCAGAAGCAGTGAAGATGCTTAAGGCCGAGTACTTGCTAAAGGCGATCGAAGAACATAAAATGGACCAAGCCATAATATTTTGTAGAACAAAGCTGGATTGCGATAACATGGAACAGTACCTCATTGGAAAGGGGGGTGgCAATCGCAACAGCAATAAATTTTCTTGTGTGTGTTTGCACAGCGATCGAGGCCACAAGGAGCGTCAAAGCAATCTAGCTGCGTTCAAGAGTGGACGTGCAAAGTTTCTGATTTGTACCGATGTTGCAGCAAGAGGAATAGACATAAAAGGCATTCCATTCGTCATTAATGTCACCCTGCCAGATGACAAAGCCAACTACATCCATAGAATTGGTAGAGTAGGCAGAGCTGAGCGAATGGGCCTAGCTCTATCCTTTGTATCtgctgaaaaagaaaagTATTTAGCCGACATCGAAGAACATCTCGGAGAGACTATTAGCACAGTTGAACCAGACCTCAAGGTTCCCACGAATGAATTCGACGGGAAAGTTGTTTACGGCCAAAAAAGATCGAATAGGGGTGGTAATTTCATGTACCATACTCAAGAAATTGCGTCTTCGGTAAAAGAGTTAGCTGCTTTAGAAAAGAAGGCTCAGCTGTCCTTTCTCCAGCTAAAGACTAACTGGAAGACATCGGCTACCTGA

Transcript

BRAKERMNPT00000010563

Protein

Uniprot

Uniprot term	Description
Q5XH91	ATP-dependent RNA helicase DDX1 OS=Xenopus tropicalis OX=8364 GN=ddx1 PE=2 SV=1
A2VD92	ATP-dependent RNA helicase DDX1 OS=Xenopus laevis OX=8355 GN=ddx1 PE=2 SV=1
Q91VR5	ATP-dependent RNA helicase DDX1 OS=Mus musculus OX=10090 GN=Ddx1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00060	Lig_chan	Ligand-gated ion channel	Family	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00622	SPRY	SPRY domain	Family	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan
PF07885	Ion_trans_2	Ion channel	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR001320	Domain	Ionotropic glutamate receptor, C-terminal	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR043136	Homologous_superfamily	B30.2/SPRY domain superfamily	Interproscan
IPR003877	Domain	SPRY domain	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003280	Family	Two pore domain potassium channel	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001870	Domain	B30.2/SPRY domain	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR013099	Domain	Potassium channel domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24031	RNA HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0015276	Molecular Function	ligand-gated monoatomic ion channel activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005267	Molecular Function	potassium channel activity	Interproscan
GO:0071805	Biological Process	potassium ion transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K05641	ABCA1; ATP-binding cassette, subfamily A (ABC1), member 1	-	Transporters	ko02000	deepkoala