Gene detail

Detailed information of BRAKERMNPP00000013435.1 in Nemopilema nomurai

Genomic Location: :...
NR annotation: XP_012554126.1, ATP-dependent RNA helicase dbp2 isoform X3 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERMNPT00000013435

ATGTGGAAAAGGTTGAAGAACAATTTGGACACCTGCCCATGTTCAGCAAGATTAGAGGAAGGAACGGAGGAAGACACATTTCATCTAAGAAGCCAAATCGAGGATCTTATTATTCTGTGTCCAAAACTTTGCGGGGAAAACTTCAGACTTGGCGATAAAGATGACCACTTCAGAGTCACCTGTCAAATGAGCAAAGTTCGTTGTGAATACTCAGGCTGTCATTACCAAACGACAAGAAGAGACATGACGTCACATGTAAAAATTTGTGACTACAGAACAGTTAGTTGTGAGGGCTGCCAAAAGAATGTGAAATACATAGACCTAAGGAGACATCAGATTTCAATGGGTTGTGTTCACACGAAGCTGAAGCAAATCGTAGTTCGGCAAGTTCGTGATGCAGATAGAGAACTGAAAAAATACAACGTAGGAGTAAAGCAAGAAACTTTCAAGACGATGAGAGATGAACGCAATCTTGAAAAAGAGTACATGTGGAAGAGAATTGAGAGGAACCCCGGAAAATACTCCCCAACTCTAGTTCGCTACAATAATAATCCTTGTGGTAATACGAGTGGACGATCTGGGGGTGGTGATCCATTTTCCCCCCAACTTGTGGAGTCCCCAATGCCATATAGAAACTCACCAGTTCTGTTGAGGTCAAGAGAAAGAAAACTAAGATCTGCTGAACCACATACTTGCAAAAGGTGCAAAAAGGGGTATACCTCTGGGGTGAACCACAAAGTATCATGCACATGGCACAAAGGAAACATGTTTATCATAAAGAATCATGACATTTGTAGCGAAGCTTTGCGATGCAGCTACATCGAATTCCCCACAGCACTTACAGAAAACGAGTTTGCGCTCGGAGGATACAGTGGAGGGAGTTATGGTAGCCGAGGGCGAGGAAGAGGTGGCAGTTCAGGGCATGGAAGAGACAGTTTTGGAAGCAAGTTTGATATGCCCGGAAAAACACTTCGAAAGCCTAAATGGAACCTCAGTGAACTTcctgaatttgaaaagaatttctaCAGAGAGCACATTAATGTTCAAAACCGGACTAGTCAAGAAATAGATTCATACCGGATGCAAAAGGAGATAACAGTTATTGGTCGAAATGTTCCCAAGCctgtattttcatttgaagaagCCGGATTCCCAGAGTATGTCATGGGTGAAATCCGAAAAGAGGGTTTTGTTGAACCAACAGCAATTCAGGCGCAAGGATTTTCAGTAGCGTTGTCTGGCAGAGATTTTGTTGGCATTGCACGCACAGGATCAGGAAAAACACTATCgTTCATCCTTCCTGGCATTGTACACATAAATGCTCAGCCTCTTTTGCGGCCTGGTGATGGTCCCATTGTGTTGGTACTTTGCCCTACAAGGGAACTGGCACAGCAAGTTCAGCATGTAGCTGCTCAGTTTGGAAGAACCTCAAAAATCAAGAGCACTTGTGTATATGGAGGTGCTTCAAGGGGTCCTCAGATTCGAGACTTGGAGAGAGGGGTAGAGATAGTAATCGCTACACCAGGACGACTTATTGATCTGATTGAGGCAAGAAAGACCAATCTTCGCAGAGTGACTTACTTGGTGTTGGATGAGGCAGACAGAATGTTGGATATGGGATTTGAACCTCAAATAAGAACGATAGTTGATCAGATTAGACCTGACCGACAGACTCTCATGTGGAGTGCTACATGGCCTAAAGATGTCAAAATTCTTGCAGATGACTTTCTCACTGACAATGTACAGGTCAATGTAGGCAAGCTGACACTCCATGCAAACCAAAACATTCTACAAATTGTTGATGTTTGCGATGAAtatgaaaaagagaaaaaGTTGTCAAGGCTTTTAGAAGAGATCATGTCTGATGACAAAGAAAATAAGATTTTGGTTTTTGctgaaacaaagaagaaaactgATGAAATTACAAGAAGGCTAAGAAGGGATGGGTGGCCTGCTATGTGTATTCATGGGGACAAATCTCAGCCTGAGAGAGACTGGGTTCTGAAAGAATTTCGTGATGGGAAAGCTCCAGTTTTAATTGCTACTGATGTTGCCTCTCGCGGACTAGACATTAAGGACATCAACTTCGTAGTCAACTACGATTTCCCCAATTCCGTCGAAGACTACGTCCATCGAATCGGCCGGACGGCCCGCGCGGACAAGAGCGGAACGGCATACACGTTTTTTACCGCCGGCGACAGTAAGAACGCCGTAGAGTTGATTGCTGTTTTGCAGGACGCAAATCAAGAAATACCGGATAAACTAAGGTCGCTTTCTGTCTCGATGCAAGCCAGAGGAGCGAAGAGGAGTCGTTACAGAAGTAATGCTGGCGGCAGGGGCTTCGACCGAGGTGGCAGCAGTTTTGGCTCTGGCACTTCGCACAAGTATGTTGGTGGTCACGACCTTCGTGCCGGCCAGAAGAGATCTTACTCCGGATCGCAAAGTGGCCCGCCAACCAAGCAAACATACGGTAGCAGTAGGCCACCACCACCGCCCCCCAGTCGCCCCCCACAGAAAAGCCAAACATACCAATCGGGCCAAAGCTCGTATGGTGGTGGTTCGTACAGCCAGGGTCAGAGCAACGGCAACTGGGGGTCTCAGTCGTCGCAACAAAGCTACAGCTCCTTTAGCCAGAGCGACAAGGGACAACAGGGCCAAAGTGGCCAGTATTCCTATGGCTACTAG

Transcript

BRAKERMNPT00000013435

Protein

Uniprot

Uniprot term	Description
Q61656	Probable ATP-dependent RNA helicase DDX5 OS=Mus musculus OX=10090 GN=Ddx5 PE=1 SV=2
P17844	Probable ATP-dependent RNA helicase DDX5 OS=Homo sapiens OX=9606 GN=DDX5 PE=1 SV=1
Q4R6M5	Probable ATP-dependent RNA helicase DDX5 OS=Macaca fascicularis OX=9541 GN=DDX5 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF02176	zf-TRAF	TRAF-type zinc finger	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR000629	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001293	Domain	Zinc finger, TRAF-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47958	ATP-DEPENDENT RNA HELICASE DBP3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13178	DDX17; ATP-dependent RNA helicase DDX17	EC:5.6.2.7	Spliceosome	ko03041	deepkoala