Gene detail

Detailed information of BRAKERMNPP00000014535.1 in Nemopilema nomurai

Genomic Location: :...
NR annotation: XP_047132067.1, uncharacterized protein LOC105847408 isoform X2 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERMNPT00000014535

ATGCCAAAGTCTAGCCAAAGTCAGACAACATTGTTCCAAACATGGGGCTTCTCTGGAAACAGCAACAAAGAGCCACAGAGATGTCACGAGAAAAGAATGTCTAAGAAGACAAAAGAATATCAAGCAAAGCGAGGAAGGGATAAAGTCGAACCACATGAAAGTGGCATTATCAGTGATGAAAACAATGGAGTAGAAGCTGATGACATTGCAGAGTGcatagaaaatgatgatgatgttgagCTCTGTGAAGATATTGAGAAATCAAATAAAGACacatttttggaaaagaatcATAATCCTAATTGTACTCCAGAACAGTTGCCTGGTTTTGACTCCTCTTCTGGACACAGCTACATCTATCCAATCAACTACCCAATTAGAGAATACCAGTTTCGAATCATAAGGAAAGCATTGGTAGAAAACACACTTGTTGTTTTGCCAACTGGGCTAGGAAAGACATTTATTGCAGCAGTTGTAATGTATAACTTCTATAGATGGTATCCTCAAGGCAGAATTTTATTCATGGCTCCAACAAAGCCTCTTGTTGCACAACAAATCCAAGCATGCTACAGTATAACTGGCACACCACCTGAAGATACTGCTGAGATGACAGGGGCAATGCCACCTGCTAGGCGGAAGTTGCTGTGGGAAACTAAAAGAGTTTTCTTCCTGACACcacacattttgcaaaatgacctTGGAAGAGGTACATGCTGTGCCAAGAATATTGTCTGTCTTGTGTTTGATGAAGCACACAAGGCTCTTGGAAATTATGCTTATTGCCAGGTGATAAAAGAAGTGGCTGGTTTAAAGAGCAACTTCCGTGTTCTGGCGCTGAGTGCTACCCCAGGGGGAGATATGAGTGCTGTACAACAAGTTGTTACAAACCTTATGATTTCTCATGTTGAACTTCGAAGTGAAGAATCAGAAGACATAAAACCATATGTTTTCGGCAGAAATATTGAGAAAATTGTTGTCCCCCTAAGCAATGAGCTGAAGGAAGCCAGAACACAGTTTCTAAAGGTGCTTGAATGCATTATCCAGCGGCTTTGCACTCAAGGTGTATGCTGGCAGTACGATGCtgcaaaaatttccaaattcttTCTGCTAAAAGCGAGAGACCAGTTTCGCGCACGTGGCCTTGAAGATAAGACGCGCGTGGGACTGATCGAGGGGGACTTTGCTTTGGCAATCTCCTTGTACCATGCTTACGAGTTGTTGCAGCAGCACGGCATTCTGTCATTCTACAACTTCATGAAGGAGGTTTATTGTGGCTCAAAGGGCACAGCAAGATGCCGCAACGAACTGTTGAAGCATGAGAAATTTACTGAGCTGATGAATGGCCTTCAGCAACGTATAGAGCCCGTCGATGATGCAGATTTGTCGCTGAATGGGTCGTTTTTAGAGTCACTCACACCCAAGCGACGCTTACTTAAGTCAATACCAAAGCCTAGCTCGTTGTTTTCCAGTCACCCCAAGCTACAAAAGCTGGAGGAGATTGTTGTAagccattttgaaaagagTAAAGAGAAGGAGCCAGCACACTCCAGCCAAACACCCTTAAGCACTAGGATAATGATCTTTTCCCAGTACAGAGATAGTGTCCAGGAAATAACTGCAGTTTTGAGCAAGCACCAGCCGCTTGTCAATGTGATGTCATTTGTTGGGCAGAATGGTGCCTCCAAGGGCAAAAGGGGGTTGACCCAAAAAGAACAGCTTGAGGTCGtagaaaaatttcgaaaaggCGGCTATAACGTATTAGTATCAACTTCAGTCGGAGAGGAAGGTTTGGATATTGGTGACATAGACCTTATCATTTGCTTCGATGCCTCGAATTCACCAATCCGGTTGGTACAGAGAATGGGCAGAACTGGGAGAAAGAGAGCCGGGAAGATTGTAATATTAGTCACTGAAGGCAAAGAGGACCAGATCTACAAAAGAAGTTTAGTTAACAAGAAGAGCATTCACAAAAAGCTGGCTGATGCGACGAACTCGCTGGTTTTGTATGACGAAAACCCTCGCATGCTACCGCGGCAGATGAACCCATTTTGCCTGAAAATGCAGTTCACAGTCGAACCCAAGGAGGCGTTGAGACGTGGTACTAAAAGAAAATCAACTGAAGTCCAAGCAAAGCCGTGCCGTAAAAAGCTGGGTAATCCTGATTCAGAAAATGGGTCGACATCGAAGCGTTTTCGGCCAGAAAATAGTGGCATGCAAGAAGCACCTTTTGAAGACGGACACAATCATTCTGATGTTGATAGGATGGAATCAGAAGGAGAGGATCAAAGTAAGAGCAAGTCAGGCAAGCGGAGTAAGCGGCCTGGGAAACGAAAGGGATGCGGTGAAAAGAAGCCCGTggaaaaagtagaaaaaggGAAAAGATCTCGCCAGGATCAGAAGGCTGAAAAGGTTAAGGCTTGGAGGCGAAGCACATTGATGGATGCTAAAAAGGATGTTGATCTAGATGCGAGTCAAGGCAATTGTGATTTTGTTGGAACTGATGCATGTACTGGAATAGAAGAAGATGCTTTTCAAGGCGATTTCATTGGCAGCCAAGACGATGGAGAATCTAGTCTAGGTAAAGAACACGTAAACGCAGATTTAGCGAATTGTGACGTTGCTATAGACAAGAGTTTCTTAGAGGACGCATGCACATCAAAAGACATTGAACAGGCCAGTgacaaaatgacgtcaccagCAGCGTTTGATGAGCCAGTTCTTATAGAAGAAGAGTCAAGTGCTATTGACAAGGAGGCACAGAATGTATCTGACTATATTTCAAAGGACATTTTAAAACCACATTTTCGAACGGAGAATCGCAGTTTTGGTCCAGGTGTGGTTGAGAATAAACGCGAACCAGTCCCCCCTCCTCCAGATTCAGCTGACCTCGATTTTTTGTTGGACGATTCCCCAGGTGAACCTGAAGGGAATCACGTGTTTGCACAATGCGCAGCGGACGGCGATGGAATATTCTATGAAGCTGCTACGTCTCGTTACGGTGCAcatggaaataaaatttcagGTTGTGAAGTCGAGGATGGTGTCGGAGAAACGTCACGTGACAAGCTGCTTTCTGGTGATGGTAAATACGTTGATAATTCGAAGTCTACTGACATGTTAGAAGATGGAGCTGAACATCGAAGTGAAGATTGTAAGCGAAATTTTTCAATCGATGTTGAAGGGGAGTTCATGATCGAAGAAAGGGGTGAAAACAACTCTTGTTGTTGCGATATGGAGATTTGTTCTGAGCAGAACAGGGAGCCGATTAAAGAGAAGAAAgatgatgaaattgaaaatgtaaacTATAACCGAAACGGATCTGATCTAGAAGATCTTGACTTGTCGACATCATGCCTATTTGGCGATAGCTTGTTTATTGACGAAGATGAATTTGAAGATTGTCCTTCCCCACCGGTTGTTGACCAGAAACAAACACCGCAATCAGTTGGTTGTGATGAAAAAACGGGGGATCCATGCCTGACTTTGACGAGGGATTCTTTATCGACCAGGACTGTTGATAGGCAAGGCAGACACGGCGACGCTAGAAGCCCTGTTGTAGATCTGGACACCGTGAAAATTGCAGATAATACTGAAGATACGAGTGCAAGAGAACGCCAAGACTTTAATGAGGCGCATGGTGACTTTGTGCCTTCCCAAGCAGATCCAGTTTTGTTTGACAGCGAGTCAGATGACAATGACACCTGTAATGAATTCCCGGTCCTGTCGCTTTCATCTCGACTTCGAAACAAAGGAGTATTAGGAGTCCAGAAAGGTGAAACGGGCGAAGAACGGGAAGACAGCATCTTTGTTATTGATGCCGAGTCTAAAACGTTATCTGCTGAAACTGGGATTGGGCAAGTTTCAAGCAACTTAAACAGAAAAAGCTCTAGCCTAGCTGAAGCTGAGGGTCACGGCACCAGAAGGAGATGTTTAGATTCTGTTGGAGGTAATGACAGTGGCTCTGATGATGACAGCCAGTTTCCAGTTGCGTCCCTTGCCACTCGCCTACGGAATCGCGGAATCAATATAGCAGACAGTAATCTTGGCAGTTCTACCCATGCTTCTGCAGATACATCGAGTAAGGTATCAGATATCAAGCAGCAGCATTGCGATGCAGCTAGGGTACCTAACATAGAATTCTTTGATGTAGACTTCAATCTTTTTACGGTGAACAGTCCTCTTTTGAAGTCGTCTCCTAGAAAGACCAGTTCAGCAGATTTAGATGCAGAGAACTCTCCCGTGAAGAGGGGTGACTTGTCTGTGAAACATGTTACATTTAGCTCGCAGAACAAATGTCTTTcgtttgaaacagaaaatgacGAATGGGGTAAAATGGACGTGAGCGTGTCGCCCCCAGTACAATCGCAGTTGGTTCCAAGCAAACGGAGGAAACGCAGAGCAATACTAGACGAGTCGATGTCGCCCAGTAAGGAGAACGCACAGGAAAGTGAGGATTCTGATGGCGATGCTTGTATGTTgcgaagaaagaagaagacaaCAAATAAACACGTGCTCAAGTCCCCGGTTGCTCAGAATGTTGATCAAGATTCGGATGATGATTTCGATCGCGAAACTGCCGGCTTTGAGTGTTTAGAGAAGGATTATCCGGTGCTGAAGCCGCGCAAAAGTGGTCGACGAGATGCCAGAATGaaGACGTCGAAGAGCAAGCGAAAGGCCTTGTCTGCGTTCATAGACGACGAGGTAGAAGTGACCGATGATGAAAGCGGAGATGAATACGATGCTGATTGCAACGAATACGTTTTGGATAGTTTCATCGACGACGCGACGCAGATGACACAGAGAACCCCCGTGCGTGATAGGAAAGGCAAAGGCTCCTCCGTAGATATGGCCATGGTCTACAGGCAGTCCTTGTTCAGCCCCATGTGCTCGGCGTTGAACTTTGGCACACCAGCCTTCAAGGCCAATCGAAACAGATACAAAATGATAGGAAGAGATGCTTGGCAACACCCAAGTGATCAAAATGATGATGAGGCCGAGGAAGTGAATTGTTTAAGTGAAGTAAGCCTtgaggaaaatgaagaagaaggcgatgaaatggaagaagaagaagatgaaaaagaagaagaagaagaagaagaagaagaagaagaagaggaggaagaagaTGAACTCACTGGAGACAGTCTTCACTCGATGCCTGAAGACGCTGATGCAAGCGAGTGCAAACCAGGCAGTTTCTCAAGCAAGGGCACTAACTCGATAAAAAAATCACGTGTCAAACGAATTATTGATTCTGATGACGAGGATGATGATGTTATTGCGCAAATGATAATTGACGATACAGTTGACGAAAAAGAGTTTGCCAAAGGTGTTGAGGGCGCCCAACAAGACGTCTCAATTGCCCAGGTGGGGGGCGTGTCGTCTAGAGTAGATTTGAAAGATTACGGTGGGGTCTTGCCAATGCTGCAGGAAGACTTTTTTATCCCCTGTTTTGATCTTGGACTTGGGTTAACGGCTAGCAATGATACACCTACTGGATGCCTTCAAGAGGCAGCGAAACCAGATGATGTGCAACCAGGAATTAAAAATAGACTCCATTCGCCGTCCAATGCCAATGTCCCACTCAGCAAAACCGTTACGACTACAAATGGCATGAAATCAACTGCCAAAGAGGCTCCATGCATTTTCGTTCATACTAAAATAGTTACTTCAACCCAGATTGGTTCACTTCTTCGACTCAAACATCATATGCAAGTGACCGTTTGCACAAAACTTGGCTGTGATTTCGTCATAAGCAAAAGGATGGGTGTGATAAGAAGGCAACTTTCAGATATTGCCCACAATAACAGGAATGTAGATGCAATCAAAGAGATGTGCGATCACTACAGCAAGCGATGCGTGATAATCGAAAAAGATCGCGTCAAAGGTGGATCAGCAAGTGGAAAGCATGTGCCTTacagcaaacattttaccGGATTGCTGGGAAGTTTGGTCACCAGCCAAGTTAAAGTCCTATTTAGCGATTCTCAAGaaGAAACAGCTCTTCTTGTTTCGCGACTCGCAACAATGGAAAATGCAACTGATTTCAAGCTTTCCTCTTCAACAAACAACCTAAAGAGCAGTGATTTAGAACAGCTATTGAAAGTCTTGTTGACCGTCCCATCCATTCTTTATCCACAAGCTGTACGGATTTGTAACGAGTTCAGAAGTCTTAATGCTTTGATTAACAGaaaaattggaaCCAAAAGCAACTATGATGTGGCAATTGTTGGTGGTGGCATTATTGGCTTGGCCACAGCTCAGGAGCTTATCAACAGGCAGCCAAATTTAAAGTATATTGtccttgaaaaagaaaatgagctTGCTTCACATCAGACTGGACACAATAGTGGCGTTATACATGCTGGAATATATTATAAACCTGGGACTTTAAAAGCAAAGTTGTGTGTTGAAGGATTAGAATTGACATATAAGTATTGTGATGAGCACAATATTCCATACAAGAAATGTGGCAAAATAATTGTTGCAGTAACTAATGAAGAAGTACCAAGACTGGAAGATTTGTATAAACGAGGTGTCACAAATGGTGCAAAAGGACTCACCTTTTTGTCACGTTCAGAAATTAAGGAGATGGAACCACATTGTGAGGGCAAAATAGGACTGTATTCACCAAACACTGGTATTGTTGACTGGGGACTTGtggcaagaaaatttggtgaagtttttgagaaaagtggAGGGAAAATTGTGACAGGATTTGAGgtaaCTGACTTCAGAAGTACATTGGGACGGCCAAACAGCAGCCCAAGTGATAATGGTGAGGACTACCCAATTCAGATTTTCGGCAAAAACAAGGGGCCAATTAATTGTCGCTATGTTCTTACTTGTGGCGGGCTTCAATCAGACAAATTAGCAGAAAAGACTGGGTGCAGCAGTGAGCCAAAGATAGTGCCCTTTCGTGGAGAATATCTTGTGCTGAAACCCCATAAGCAATACTTGGTAAACGGAAATATTTACCCGGTGCCAGATCCAAAGCTTCCATTCCTTGGTGTACATTTCACACCTCGCATGGACGGCAGTGTCTGGCTTGGGCCAAATGCACTTCTTGCATTCAAAAGAGAAGGATACAATTTTACAGATTTTAATTTTGCCGACCTAGCAGACTCTCTTGGCTTCAGTGGTCTGCAAAGGCTGAttgcaaagaatttcaaatttgggTTAGAGGAGTTTTATCGTAGCTTTGTATTGGAAGCACAGATTAAGCAGTTGCAAAAGTATGTTCCCGAGCTACGTCTTGAAGACGTCGAAAGGGGTCCGAGTGGAGTTCGTGCCCAGGCTCTAGACAAGGAGGGGAACCTCGTTGACGACTTTGTATTCGACTCAGGACAGAGTGCTATTGGACAGCGAGTTCTTCATGTTCGAAACGCTCCTTCGCCCGCAGCGACCTCGTCTCTGGCCATTGCGAAGATGGTTGCCGACAGAGTTCAAAGTCAGTTCCAGTTATAG

Transcript

BRAKERMNPT00000014535

Protein

BRAKERMNPP00000014535.1

MPKSSQSQTTLFQTWGFSGNSNKEPQRCHEKRMSKKTKEYQAKRGRDKVEPHESGIISDENNGVEADDIAECIENDDDVELCEDIEKSNKDTFLEKNHNPNCTPEQLPGFDSSSGHSYIYPINYPIREYQFRIIRKALVENTLVVLPTGLGKTFIAAVVMYNFYRWYPQGRILFMAPTKPLVAQQIQACYSITGTPPEDTAEMTGAMPPARRKLLWETKRVFFLTPHILQNDLGRGTCCAKNIVCLVFDEAHKALGNYAYCQVIKEVAGLKSNFRVLALSATPGGDMSAVQQVVTNLMISHVELRSEESEDIKPYVFGRNIEKIVVPLSNELKEARTQFLKVLECIIQRLCTQGVCWQYDAAKISKFFLLKARDQFRARGLEDKTRVGLIEGDFALAISLYHAYELLQQHGILSFYNFMKEVYCGSKGTARCRNELLKHEKFTELMNGLQQRIEPVDDADLSLNGSFLESLTPKRRLLKSIPKPSSLFSSHPKLQKLEEIVVSHFEKSKEKEPAHSSQTPLSTRIMIFSQYRDSVQEITAVLSKHQPLVNVMSFVGQNGASKGKRGLTQKEQLEVVEKFRKGGYNVLVSTSVGEEGLDIGDIDLIICFDASNSPIRLVQRMGRTGRKRAGKIVILVTEGKEDQIYKRSLVNKKSIHKKLADATNSLVLYDENPRMLPRQMNPFCLKMQFTVEPKEALRRGTKRKSTEVQAKPCRKKLGNPDSENGSTSKRFRPENSGMQEAPFEDGHNHSDVDRMESEGEDQSKSKSGKRSKRPGKRKGCGEKKPVEKVEKGKRSRQDQKAEKVKAWRRSTLMDAKKDVDLDASQGNCDFVGTDACTGIEEDAFQGDFIGSQDDGESSLGKEHVNADLANCDVAIDKSFLEDACTSKDIEQASDKMTSPAAFDEPVLIEEESSAIDKEAQNVSDYISKDILKPHFRTENRSFGPGVVENKREPVPPPPDSADLDFLLDDSPGEPEGNHVFAQCAADGDGIFYEAATSRYGAHGNKISGCEVEDGVGETSRDKLLSGDGKYVDNSKSTDMLEDGAEHRSEDCKRNFSIDVEGEFMIEERGENNSCCCDMEICSEQNREPIKEKKDDEIENVNYNRNGSDLEDLDLSTSCLFGDSLFIDEDEFEDCPSPPVVDQKQTPQSVGCDEKTGDPCLTLTRDSLSTRTVDRQGRHGDARSPVVDLDTVKIADNTEDTSARERQDFNEAHGDFVPSQADPVLFDSESDDNDTCNEFPVLSLSSRLRNKGVLGVQKGETGEEREDSIFVIDAESKTLSAETGIGQVSSNLNRKSSSLAEAEGHGTRRRCLDSVGGNDSGSDDDSQFPVASLATRLRNRGINIADSNLGSSTHASADTSSKVSDIKQQHCDAARVPNIEFFDVDFNLFTVNSPLLKSSPRKTSSADLDAENSPVKRGDLSVKHVTFSSQNKCLSFETENDEWGKMDVSVSPPVQSQLVPSKRRKRRAILDESMSPSKENAQESEDSDGDACMLRRKKKTTNKHVLKSPVAQNVDQDSDDDFDRETAGFECLEKDYPVLKPRKSGRRDARMKTSKSKRKALSAFIDDEVEVTDDESGDEYDADCNEYVLDSFIDDATQMTQRTPVRDRKGKGSSVDMAMVYRQSLFSPMCSALNFGTPAFKANRNRYKMIGRDAWQHPSDQNDDEAEEVNCLSEVSLEENEEEGDEMEEEEDEKEEEEEEEEEEEEEEEDELTGDSLHSMPEDADASECKPGSFSSKGTNSIKKSRVKRIIDSDDEDDDVIAQMIIDDTVDEKEFAKGVEGAQQDVSIAQVGGVSSRVDLKDYGGVLPMLQEDFFIPCFDLGLGLTASNDTPTGCLQEAAKPDDVQPGIKNRLHSPSNANVPLSKTVTTTNGMKSTAKEAPCIFVHTKIVTSTQIGSLLRLKHHMQVTVCTKLGCDFVISKRMGVIRRQLSDIAHNNRNVDAIKEMCDHYSKRCVIIEKDRVKGGSASGKHVPYSKHFTGLLGSLVTSQVKVLFSDSQEETALLVSRLATMENATDFKLSSSTNNLKSSDLEQLLKVLLTVPSILYPQAVRICNEFRSLNALINRKIGTKSNYDVAIVGGGIIGLATAQELINRQPNLKYIVLEKENELASHQTGHNSGVIHAGIYYKPGTLKAKLCVEGLELTYKYCDEHNIPYKKCGKIIVAVTNEEVPRLEDLYKRGVTNGAKGLTFLSRSEIKEMEPHCEGKIGLYSPNTGIVDWGLVARKFGEVFEKSGGKIVTGFEVTDFRSTLGRPNSSPSDNGEDYPIQIFGKNKGPINCRYVLTCGGLQSDKLAEKTGCSSEPKIVPFRGEYLVLKPHKQYLVNGNIYPVPDPKLPFLGVHFTPRMDGSVWLGPNALLAFKREGYNFTDFNFADLADSLGFSGLQRLIAKNFKFGLEEFYRSFVLEAQIKQLQKYVPELRLEDVERGPSGVRAQALDKEGNLVDDFVFDSGQSAIGQRVLHVRNAPSPAATSSLAIAKMVADRVQSQFQL

Uniprot

Uniprot term	Description
A7SMW7	L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Nematostella vectensis OX=45351 GN=v1g172254 PE=3 SV=1
Q8IYD8	Fanconi anemia group M protein OS=Homo sapiens OX=9606 GN=FANCM PE=1 SV=2
Q8BGE5	Fanconi anemia group M protein homolog OS=Mus musculus OX=10090 GN=Fancm PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF01266	DAO	FAD dependent oxidoreductase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR036188	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR006076	Domain	FAD dependent oxidoreductase	Interproscan
IPR039686	Domain	FANCM/Mph1-like, insert domain	Interproscan
IPR044749	Domain	FANCM, DEAH-box helicase domain	Interproscan
IPR011335	Homologous_superfamily	Restriction endonuclease type II-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14025	FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000400	Molecular Function	four-way junction DNA binding	Interproscan
GO:0009378	Molecular Function	four-way junction helicase activity	Interproscan
GO:0036297	Biological Process	interstrand cross-link repair	Interproscan
GO:0043138	Molecular Function	3'-5' DNA helicase activity	Interproscan
GO:0045003	Biological Process	double-strand break repair via synthesis-dependent strand annealing	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan