Gene detail

Detailed information of BRAKERMNPP00000014689.1 in Nemopilema nomurai

Genomic Location: :...
NR annotation: CAH3045141.1, unnamed protein product, partial [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERMNPT00000014689

ATGGATGCGAAAGCTGACCAGCTTTTCTTTATCGACAAAACCCCCAACCTCTCTGAGAGTGAGACTGTAAATTTCCCTGAatctgttgaacaagaggaTGGAAAAGTTGCGCGAAAGCCAAGAAGATCGAAGAAGAAATCTAAAGCTTTACTGGGTGCTGATGACAAGGAGACCGAACTTGAACGACTTGTTCTTGGTGAGAAGGCAGATAACCTCTTTCTTGGTGACGAAAAGCAGCTTGAAATTGGCGAAGCAGTTCATCATGTTGGAGAAGATGACAAGGAAAGCGTTGTTGACGAAGAATCCGCGGAAACGgattctgttttgaaaatatcaaagaagAGAAAGCCTGCTTgggttgatgatgatgacaaagaGCTCAGCATTGACATCAAGCATGAAAAAAGATTAAGGAAGTTGAGAAAATCAAAAAGGGATTTTAACATTGATGGTGAGGAATATGAAAAAAGACTTAGGTCACAATATGAAAAATTGGTTGGCTCTCCAGAATGGGCAAAAGCTAGAGAGGAAAATGTTGATAGTGATGATGAAGatgatttttttaaaagcacaaGGACCCACCTAGGAAGGTCACAAAGCCTACCACAAACAACAATATCAGTAAAAAAGATTAGAGATGTAAACTTTTCCAAGCACAGTAGTGCCTCAATCAAATGCTTAGAATTTCACCCCTCCACAAAAGTTGTGCTTACTGCAGGCTTAAACAAGACACTCAGCTTGTTTCAGATTGATTGTGAAAGAAACCCATGCATCCAAAGTGTTTTTGTGGACTCCTTCCCCATCTACACAGCGCATTTCACTCCAGACGGACAAAAGATAATAATGTCgtcaaagagaaaaaatttttatgtgTTTGATTTAGTCACAGCTGAAGTAAAGAAAATACTTGAAATAAAAGGGACTACAGATAAATATTTAGACAAGTTTGTTGTGTCTCCCGACAGTTCCTGTATGGCGTTTTTGGCTAGCAGTGGATATATACACCTGGTTTCATTGAAGacCCTCCAACTTATACGCTCCTTAAAAATGAACGGAACCGTACTGTGTGCCGCTTTTTCGTCAGACGGCTCAATCTTGTACACTTTTGGAGGAGATGGGGAGGTTTACGTTTGggacatgaaaacaaaaaggtgcaaacATCGTTTTCGCGACGAGGGATGTCTCACAGGAACATGCATTGACACGTCAAAAGATGGGGGATACATTGCTTGCGGGTCAAACAGCGGGGTTGTCAACATCTACAATGACGAGTGTCTCTCAAGTCGAAACCCAAAGCCAATAAAGACAGTAATGAACCTGACCACCACATCAATTGACATCGTGAAGTTTAATCCAACAAGCGAAATTCTTGCCATCTCTTCAAGAGCAGTGAAGGACTCATTGAAACTGCTTCATGTACCATCATTGACCGTTTTCGCAAATTGGCCAGCTAGAAAAAGCTCCTTTGGTTACATACAGTCTTTGACGTTTTCAACATTGAGCGGCTACTTGGCTATTGGCAATGATGCTGGAAATGCCCTTCTTTACAGATACTTCATCTTCTTGGAAAAGAGGAAACAAAAAGGAACCATTGCACTGTCAAAGATAAAAGTTGTAGAAAATGTAGATGATGTTGCCTTGGACCgcaagttttgttttcagGTACAACACGACAACTTAACACTGTATGTTATTGCAAATAGTAATGAAGAGAGAAATGAATGGGTTATTGCTCTGCGATATGAGATTTCACAGCAAAACCGTcttcttttggaaaactttcaTTCTGGAATCTATGTTAATGGTAGCTGGACATGTTGTAAGGGCTGTAAAAATTCACAAGGCTGCAAGAAAACccattttgcaacaaatgcaTATGTTCCTAATGAAGTCGCAGGTGCTGAGAAACCCAAACGCCCTGATTTGCCACTCCCTCCAGTACCGGAGATTGTATACTTTCTCAgtcttcatcaaaattttgtattcaattttttgtccGTCGCACTTTTGCCAATCCCACTCAGACAATCGCCACTACTTGAGTCCAATGCTAAGGCCATGATGTTGAAGAACTTCCACGAAAGGTACTTCTACCCGAGGTCAGGTCCATTCAGAACCTTAGAGACagttaacaacaacaacaattcaTTGCCTAAATACACACAGCTATCTGAAAGGCTGAAAAGGCCCGCCAAGACTCTCATCCAAGATGAGTATCACGGACAGGCACCCCTGTCACCAGATGACCGAAACTTCCCGCGCATCTACCCGTGTAAGGTCTGCGGGAAGTCGTTCAAACGCTCATCCACGCTCTCAACACACATGATGATTCATGCAAACATCCGTCCGTTTGCCTGCAACTTCTGCGGCAAGCGGTTTCACCAGAAATCAGACATGCGCAAGCACACCTATGTTCA

Transcript

BRAKERMNPT00000014689

Protein

Uniprot

Gene family

Uniprot term	Description
Q9FMU5	U3 small nucleolar RNA-associated protein 18 homolog OS=Arabidopsis thaliana OX=3702 GN=At5g14050 PE=1 SV=1
Q5SSI6	U3 small nucleolar RNA-associated protein 18 homolog OS=Mus musculus OX=10090 GN=Utp18 PE=1 SV=1
Q9Y5J1	U3 small nucleolar RNA-associated protein 18 homolog OS=Homo sapiens OX=9606 GN=UTP18 PE=1 SV=3

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00169	PH	PH domain	Domain	Interproscan
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF00779	BTK	BTK motif	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001562	Conserved_site	Zinc finger, Btk motif	Interproscan
IPR001849	Domain	Pleckstrin homology domain	Interproscan
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR045161	Family	U3 small nucleolar RNA-associated protein 18	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18359	WD-REPEAT PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0035556	Biological Process	intracellular signal transduction	Interproscan
GO:0006364	Biological Process	rRNA processing	Interproscan
GO:0032040	Cellular Component	small-subunit processome	Interproscan
GO:0034388	Cellular Component	Pwp2p-containing subcomplex of 90S preribosome	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan