Detailed information of BRAKERMNPP00000018404.1 in Nemopilema nomurai

Genomic Location: :...
NR annotation: XP_047142239.1, transcription elongation factor SPT6-like [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q8UVK2Transcription elongation factor SPT6 OS=Danio rerio OX=7955 GN=supt6h PE=1 SV=1
Q7KZ85Transcription elongation factor SPT6 OS=Homo sapiens OX=9606 GN=SUPT6H PE=1 SV=2
Q62383Transcription elongation factor SPT6 OS=Mus musculus OX=10090 GN=Supt6h PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14639YqgFHolliday-junction resolvase-like of SPT6 DomainInterproscan
PF00575S1S1 RNA binding domainDomainInterproscan
PF14633SH2_2SH2 domainDomainInterproscan
PF14635HHH_7Helix-hairpin-helix motif DomainInterproscan
PF17674HHH_9HHH domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036860Homologous_superfamilySH2 domain superfamilyInterproscan
IPR042066Homologous_superfamilySpt6, Death-like domainInterproscan
IPR017072FamilyTranscription elongation factor Spt6Interproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR028231DomainTranscription elongation factor Spt6, YqgF domainInterproscan
IPR010994Homologous_superfamilyRuvA domain 2-likeInterproscan
IPR003029DomainS1 domainInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR037027Homologous_superfamilyYqgF/RNase H-like domain superfamilyInterproscan
IPR035420DomainSpt6, SH2 domainInterproscan
IPR032706DomainTranscription elongation factor Spt6, helix-hairpin-helix motifInterproscan
IPR041692DomainHHH domain 9Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10145TRANSCRIPTION ELONGATION FACTOR SPT6Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0006368Biological Processtranscription elongation by RNA polymerase IIInterproscan
GO:0008023Cellular Componenttranscription elongation factor complexInterproscan
GO:0031491Molecular Functionnucleosome bindingInterproscan
GO:0034728Biological Processnucleosome organizationInterproscan
GO:0042393Molecular Functionhistone bindingInterproscan
GO:0140673Biological Processtranscription elongation-coupled chromatin remodelingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0006139Biological Processnucleobase-containing compound metabolic processInterproscan

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