Gene detail

Detailed information of BRAKERNUSP00000001706.1 in Montipora cactus

Genomic Location: not available for this species
NR annotation: XP_015753276.1, PREDICTED: DNA topoisomerase 2-binding protein 1-like [Acropora digitifera]
Species Montipora cactus · all data for this species · gene families

Sequence

CDS

BRAKERNUST00000001706

ATGGAAagtaaccaagagaaaatgctCCGGTTTGTCACCACTGACAAACTTAaggaaaaatatcttttgcgGGCATCGGAAGCTTGCAAGGAATACGAACTCGAAATTGAATGGATTTCCGCAAACGACTTGAAAAATCAAGATATGAAAGACCAAAGATCCGTGTTTGTGCTGGAACGTTTTGAAGGAGAGGCCTTTGAATTCTTGAAAGAAAATGGTTGCCAAATCGTTGGACCACAGTGTGTCTTATCGTGTTTGCAAACGCAGACCTCTTTGCCTATAAATTTGGAGCATCCGGTGTATTCCGTTGCTATGAGAGGGATGGCTATAACTTGTACAAGTGTTCCGAGACAGGAAAGAGACCGATTGTCTGAGTTGATCCAGTTTATGGGAGGAACTGTTTTGAAGGATCTCACGAGCTCAGTGACTCATCTCGTGGCTGGTGAAGTTGGTTCAAAGAAATATCGAGTTGCGTGTAGTCTTGATCAGCCGATGCCCATTCTTTTACCAGAATGGGTCTACACTTGTTGGGATATGTGTCACGATAGGCATATATGTGCAACAGATGATGACTTCATGGAGTTTAAATGCCCAATATTTAAAGGTATAACTCTTTGTGTGACAGGCATTGATGCAGAGaagagaaaggaaataaaacatCTTGTCACCCTCCATGGTGGAACATATTCGGGTGAATTAAATATGAACACTTGTACACATCTTTTGGTAGAGACTCCCCGCGGGGAGAAGTATGAATATGCAAGGAAGTGGAATCTCCATTGTGTTTCTACACAGTGGTTTTTTGACTCAGTTGAAGATGGTTTCTGCCTTGATGAGTCGCCTTATTATATATTACCAGATGAAGACAACTGCTCTACAGCGGGAAGGAGACTTTCAGGCAAGCTTGTCAAAGGCATCACTGCTTCTTCCAAAAGTAGTGCAGCAAAGAAGAGTTCTAACAAAGCTGCAGAAGCTGCTTTGAAGAGTGCACAGAGACATGGTAATGAAGATCTTATGCTAACCTCTGGCAACAAAAAGTCACTTTCAAATCAGTCTAAGAGATTTAGCAATGTTTCCAGGCTAGCAGAAACTCACCTAGGTGATGCTGAAAGCTCAGACTTTGATGTGCAAATGCAACCTGGAAATCTGTTCCTTGATGGGTGCAAGATTTACCTGAGTGGATTCAGTGgtgagaaacttgaaaaattacGAAAGATAATAAATTGTGGCGGAGGTACAAGGTTTAACCAGATAAATGAGATTGTTTCTCATGTCATAATTGGAAACAAAGTTGATGCTGAACTTGAATCTTTATGCAGCTGTGACTTTCAAGGTTTTGTTGTTGATGTTCAGTGGATTTTAAATTCTGCAAGAGAAGGGCAAAAGTTGCCTGAAGAAGaatGCAAAAAGGCTTTGAACGATTCCTTTGGTCATCTGAACATCACTTATAACGATAGGTTTGACCCCATCTGTACATGGACGATTGGAAAGTTTGGATTGGCTGAACAAGTGGCAATTGTTTCGATTGAAGGAATACATTTAGTTTATTGCAGCGAATATGTCAAAGCTTTTGATGGCAGTGGAGCACAGGTTTTTACCCGGGAAGGATGTCGAAAAAACCATACCTTCGAAACATTTCTGGAAATACCATTTCAAGATTCACAGAACATCACGATACAGGTTTCACTTGACAGCAAACAGAGCTATTTGAAAGTTGATTATGGTATTTTAAAGGACGGTCTCTTTTCGGCAACTCATTTGGCTGGGTGGAAGattatctttgaaaacaggaCATCCAATAGTCTGCAATTCCGTTGGATGGATATCAACAATCGATCAAACGCTGATGACGTACGCTTCTTTGTAGTGATTGCGAAGAGCAGTCACAACAGTGTGCCTGTCAGGAAACTGTTCTCTCCAAATGTTACATCCGTGCAGATAGCAGATCTTGTTTCTTATACTGAATACAACGTCAGTGTTGTGGCTATTGATACTAACGGATCGCCACTTGAGAGTGAGTTTCTCCTAGCAATGACGGATGAAGGGGTTCCTAGCAGTGCTCCAAGAACTTTATTCACAACCAATATTTCATCGACTCGTGTGACAATACAATGGAGCCCGCTTCCTAGACAGTATCACAATGGTCGCCTGTTGGGTTACAAAGTGTTCTTCCAGAGGGCTTCGAATGCGTCATATCCTGAAGATGCAAGCAGTGTAACCGTTTCCAATTCGACCAGGGTAACTTTGAGGACTCTTGACCCAGGACAGCGCTATAAGGTCTACGTGTCTGCGTTTACTTCCAAAGGAGATGGACCTCGCTCTAGTGACCATATTGTAACCACAGcTTGCAGGTTGTCTGTTAACCATTCAGTTGGTTTGATTGACGTAGCACCAGCATCTGATTATGATACCTTAGACTGTTCTTGGACAATTGGAAAAGTTGGCATCACCAACGCAGTTGCTCTGTTTATAATCCAGAGGATAAATCTTGGTAGCTGCAGTGGGCACTTGATGATATTTGACGGGAGCAAGACTTTGAAATATCAGCAAACCAGGGATACATTTATCGATGATGAACAAATGGTCGAGGTTCCTTTCCTAAGTTCAGATGAGATCACAGTTAACATTTTCTTGACGCGTCTGGGAAGCAGCGTTAAAGCTCAGTACGTGATTTTGGGAAATGGTCTCCTTTCAGTGAGAATCTATGACTTAAAGAAAAGATTTGACGAGATCGAAAAGtcccaaaattttattttgaagaaaTACACTTGTAGTATCAACGATTAA

Transcript

BRAKERNUST00000001706

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B3EX02	MAM and fibronectin type III domain-containing protein 1 (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1
Q6ZQF0	DNA topoisomerase 2-binding protein 1 OS=Mus musculus OX=10090 GN=Topbp1 PE=1 SV=2
Q800K6	DNA topoisomerase 2-binding protein 1-A OS=Xenopus laevis OX=8355 GN=topbp1-A PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004195 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00533 all species →	BRCT	BRCA1 C Terminus (BRCT) domain	Family	Interproscan
PF12738 all species →	PTCB-BRCT	twin BRCT domain	Family	Interproscan
PF21298 all species →	TopBP1_BRCT0	TopBP1, BRCT0 domain	Domain	Interproscan
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036420 all species →	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR001357 all species →	Domain	BRCT domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR049542 all species →	Domain	DNA topoisomerase 2-binding protein 1-like, BRCT0 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13561 all species →	DNA REPLICATION REGULATOR DPB11-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006270 all species →	Biological Process	DNA replication initiation	Interproscan
GO:0007095 all species →	Biological Process	mitotic G2 DNA damage checkpoint signaling	Interproscan
GO:0033314 all species →	Biological Process	mitotic DNA replication checkpoint signaling	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERNUSP00000001706.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.