Detailed information of BRAKERNUSP00000002374.1 in Montipora cactus

Genomic Location: BLFO01000128.1:277...2867
NR annotation: XP_029192398.2, LOW QUALITY PROTEIN: dynein heavy chain domain-containing protein 1-like [Acropora millepora]
Species Montipora cactus · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8IVF4Dynein axonemal heavy chain 10 OS=Homo sapiens OX=9606 GN=DNAH10 PE=1 SV=4
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0027568 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12774
all species →		AAA_6Hydrolytic ATP binding site of dynein motor regionDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR043157
all species →		Homologous_superfamilyDynein heavy chain, AAA1 domain, small subdomainInterproscan
IPR026983
all species →		FamilyDynein heavy chainInterproscan
IPR035699
all species →		DomainDynein heavy chain, hydrolytic ATP-binding dynein motor regionInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10676
all species →		DYNEIN HEAVY CHAIN FAMILY PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0007018
all species →		Biological Processmicrotubule-based movementInterproscan
GO:0008569
all species →		Molecular Functionminus-end-directed microtubule motor activityInterproscan
GO:0030286
all species →		Cellular Componentdynein complexInterproscan
GO:0036156
all species →		Cellular Componentinner dynein armInterproscan
GO:0045505
all species →		Molecular Functiondynein intermediate chain bindingInterproscan
GO:0051959
all species →		Molecular Functiondynein light intermediate chain bindingInterproscan
GO:0060294
all species →		Biological Processcilium movement involved in cell motilityInterproscan
GO:0097729
all species →		Cellular Component9+2 motile ciliumInterproscan
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for BRAKERNUSP00000002374.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Montipora cactus tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Montipora cactus, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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