Gene detail

Detailed information of BRAKERNUSP00000002713.1 in Montipora cactus

Genomic Location: not available for this species
NR annotation: XP_029198092.2, nuclear factor 1 B-type-like isoform X1 [Acropora millepora]
Species Montipora cactus · all data for this species · gene families

Sequence

CDS

BRAKERNUST00000002713

ATGGGGTTCAGTGAGCGGGGGAAATCAGTGGGCACAATGGTTAGCGGCGAGACTACATCTCTTGTGGACTTCGTAAAAATGACTAACCCCGGATTGTTTGATTTCCAGGACGAAATACACTCGTTTATCGAAGCTTTGCTACCTCACGTAAAGGCCTTTGCTTATACGTGGTTTAATTTGCAAGCCCGAAAGCGAAAGCATTACAAGAAGCATGAAGTGCGAATGACTCCAGATGAAGAGCGAAGATGCAAAGAAGAACTTGATGCTGAAGCTCCTGAGGTGAAGCAGAAGTGGGCATCACGGCTGCTAGCCAAGCTGCGAAAGGACATTCGCCAAGAATGCAGGGAGGACTTCGTCATGTCGGTCGTTGGAAACAAACTCGGGTCGTCTTGCCGTTGCGTCATTTCCAACCCCGATCAGAAGGGGAAAATGAGGCGCATAGACTGTCTGCGACAAGCAGATAAAGTATGGAGATTAGACTTGGTGATGGTGATTCTATTCAGAGGTATTCCTCTGGAAAGCACGGATGGTGAACGTTTGGGCAAGTCTCCTCACTGCCAGAGTCAGTCTCTTTGCGTTCTGCCCAACCATATCACGGTGACAGTAAGGGAGCTGGATCTATTCCTAGCCAACTTCATGTGTAACAGGGAGCACAAGCAGGATTCCAGCAGTCCGGTGAGAAGTACAAACGATCCAGATTCTCATCCAATTGCTACAGAGCAGAATTTGGTCTCATCTGGTGTGTTTACAGTGACAGAACTCTACAATTATTCTAAAACACCCATCAAATGTGTTAGCTCAACACATGGCCTGATCTTAACTGATCTGGAGAATCCATCATATGGTGATGCAGGTCTTGAGCAGCGTTTTCCCAATGCACTGAGCATACACCCACGGCCAGACTCATACGACCTCAGATACAGAAAACGAAGTAGAACTATTAGCTCTGTTTCCTCAGTTGATGACGATTGTGATGAAGATGACAGAGACAGCACAGGGATTTATGTACAATCACCAGCTAGTTTCTCATCTCAAGGGTCCAACTGGCAAAATGATGTAGACTCTGGATCCAGTGTTATTCACTCTCCTTTGATTCCGTTTCCTGCCAAAATCAAACCGGAACAAAACTGTTCAGGCTACAGCCCAATGGAGAATCACAGCTCTGTTATCACCTGTCATAACGGGACCCATGAGCCCTCATCACCAGCTGTTACCTCATATAGTAGTCAAACACCACACTTGCATAACAGACCAATGAGAGACTGTAACATGAATGAATCGTCATTTATCATGCAGTTAGCACAAAATCCAAAGGGACATGGGCCAGCAAGTTGTGGTTTTAGCATGAATCTTCAGCAGCAAGGATTTGCATTTCGCCTCCCAATGCCAAATACTAATATACCCTCTGTAGGTTCAGCTCCATGCCGTACCGCACCTTCTCCTAGTGAATACATTCAGTTACTGGAGAGACCCCGCTCAAGTTCAGCTCCAAATAGCAGGCACTTTCCCACTGGGACGTCCATGGTGATACCACCGCCATTAACAAGATCACAAAATGGGGCAAGTGGCATGAACACAGATCCACGTAATTCCCCAGGacatcaacaacaacagtcACCAGTTTCAACATGCCCAAGTAAAACAAACTCACCCTCAGGAATAACACTGAATACAACTGTTCAGATAATACAGTCTCCATCAAACAATCCCAACACTGCATCATCAACATATGGCAGCCAAAGTCAGCAAGTGTTCAGCTATCCAAACCTACCTCCAGGGTGTCTTTCTTCTGTCAGCCCATCATTACCAGTTGGCTTGTTTACATCACCAGGAAACACAATAAGAGGAAGCATGACTCCTCGCTGGCCTGCAGCAATTCCAGTTCAACCCGTATCCAGTACAGGAAGTGAAGCAGAGTCAGCAGAATATAACCAAATGGTGCCAGGATTTGGTGGTATAAACCCTAACGAGGGAATGCTGGAAGGGAGGAATTTCTTCCCAATAAATAATGTGCCAGAATCAATGGAGGCCATATCAGCTCCAATATCATCCTGA

Transcript

BRAKERNUST00000002713

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P70255	Nuclear factor 1 C-type OS=Mus musculus OX=10090 GN=Nfic PE=1 SV=1
P13623	Nuclear factor 1 X-type OS=Mesocricetus auratus OX=10036 GN=NFIX PE=2 SV=1
P70257	Nuclear factor 1 X-type OS=Mus musculus OX=10090 GN=Nfix PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002791 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00859 all species →	CTF_NFI	CTF/NF-I family transcription modulation region	Family	Interproscan
PF10524 all species →	NfI_DNAbd_pre-N	Nuclear factor I protein pre-N-terminus	Family	Interproscan
PF03165 all species →	MH1	MH1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000647 all species →	Family	CTF transcription factor/nuclear factor 1	Interproscan
IPR019548 all species →	Domain	CTF transcription factor/nuclear factor 1, N-terminal	Interproscan
IPR020604 all species →	Domain	CTF transcription factor/nuclear factor 1, DNA-binding domain	Interproscan
IPR003619 all species →	Domain	MAD homology 1, Dwarfin-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11492 all species →	NUCLEAR FACTOR I	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERNUSP00000002713.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.