Gene detail

Detailed information of BRAKERNUSP00000003926.1 in Montipora cactus

Genomic Location: :...
NR annotation: XP_015760844.1, PREDICTED: cadherin-23-like [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERNUST00000003926

ATGGTGAAAACCCCCGAAAACGTATCCATCGGTTCCTGCATCGCGCAAATCACATCAACAAACCCTGAGAGCTCACAACGAGTCTATTACACTCTTCTAAATTATCGAGATACGTTTGATCTTCAAACTAAATGTGGAGACAACTACTCTACCTTTGCAAATGAAACGAGAGGGGCGCCCTTTTTGACAGTGATATCGTCTCTCAGCTACGATCACTACGTCATTCAAGGATATGAGATTCTCATACAAGCTGAGGATAACGGGATTCCTTCAGAATCGTTTAACGATACTGTCAGCATCCACGTAACTAAGCTTGATCCTTGTCAATCATCTCCGTGCCACGCGAACGCCACGTGTATCCGTAATGACTGGCAGAATGTCTCGTGCGCATGCACTGAAGGATTTACAGGAGACGGTTTTAACTGTTCGGATATAAACGAGTGCAACAACATCACATGTAGTTACGGTGGTACGTGCTTCAATCTCTGGAAAAGACATTTCTGCTCGTGTCCCAGTGGATATCACAATGGTACAGACTGCACTCTCATTAATCACTGCTTGTCAAACCCATGCCAACAGGGTGAATGTACACCTTACAGAAATGGATACAGTTGCTCATGCGCTCCAGGATATACCGGTGTTCACTGCGAAACAAATATAGACGATTGTGCGAAGGAGCCTTGCGTAGACCCGGGTATATGTGTGGATGGCATCAACAAGTTTACCTGTGAATGCTCCGATACCAGCTTCTTTGGAACTCTTTGTCAGCGAAAGTTCGGAGATCGTACGTGCGAAGAGACGCAAATTCCCGTCCCGGCAAATGTCCAAAAATATGATTCAAGTCTGTGTATATCGTCTGATGCTGTTGTTTCATTAGATTTCCCGGAAGAGGTGAACATCTCAAGTCAATATTGGCAATACCAATTTGAGCAATCAGTAGAACGGATGACCTACGAACTGCCCGAGACGGTGGACGACAACGAATCGACAAGCTTGGAAGACGTGTATATTATAAGCCCGAGATTACAACAGACAGCCAAAGCCAAGAGGAGCGCACCCAAAGAGAGCTCTAcagttaagtttgttgtgatTGTCAAATTAGGCAATGAATTAAGTGGATTACCAGTTAGAGATGTATTATGCGGCATCAACAACACTTGCACTACTGAAAGCTACGTCGAAGCAGCTGAGTCCTTTCTTGATGTTACACGCTTGCTGTGCGAGTCCACCGTGGAGGAACTTAAATCTAAAGACATCTCCAGCTGTGTAGTCGAAGTCAATGACTTCGCTTTAAAGGACGAGCGGCACTTCACAAATATGCACTTTTATTACGTCTTCGTTGGCATCGGCGTGATTCTCTTACTCGTCACTGTCACCGGACTTCTGCTCTACCGAAGGAAGAAACTAAACCAGAGGAAGCGGAAGTTGATAATACAAACGAGTGAGAGGCATAGGCCGAATGAAGACGAAACTTACACTGATACCATGTACAGACACCACATGTCAAAACAGGAAGAGCAGACTGAAGGGGCATTCAACCCGTTATACGGTACCACAGAAGAAGAAGTCGATAGGCAAGTCCATATGATGGATAATCCAATCTATCAGGAGCCCAAAGGGCGTGTCACGGTGAAACAAACTGACTCAACGACGGGATTCGAAAATCCAATGTATGGAACAATAGGACTTCTAAGGATGagcgaagaggaggaggaagcTGAGGCTAGCGGATTTGCCAATCCCATGTTCACATCTCGCACACAGcaaaagaaagaaattgacaCAGAAGAACCTGGAAGTGCTGTCTACGCTGAGCGGAAGAAACTGGCCAAGAAAACAGACACGTCCATTTACGACAAACCAAAGAAACCAAACAAACCAGTTGTTCAGGAACCGCAAGTTGTAGAGGCATCCTGGTTCTTCAATCCACTGTACCAGTCAAGCCGTGAGGTTGTGAAGTTGCCGGATATATCTAGTATTTTTcctagtcccagtccaccatcGGACAAACAGCTTGGCGACGAGCCGGGAGAAAGTGACTGCTAA

Transcript

BRAKERNUST00000003926

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12947	EGF_3	EGF domain	Domain	Interproscan
PF00008	EGF	EGF-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742	Domain	EGF-like domain	Interproscan
IPR051830	Family	Neurogenic locus notch homolog	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR002126	Domain	Cadherin-like	Interproscan
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR024731	Domain	EGF domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR015919	Homologous_superfamily	Cadherin-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24033	EGF-LIKE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan