Gene detail

Detailed information of BRAKERNUSP00000004394.1 in Montipora cactus

Genomic Location: :...
NR annotation: XP_044178859.1, LOW QUALITY PROTEIN: protein crumbs homolog 1-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERNUST00000004394

ATGCTATCCTTTTTTGTTGTAGGATTTATACTGCTTGATTATTTACAAACAGCAAAAAGTGATAAGTTCTTTTTCAATGGCACATCATCCATCCTTGTAGCATCTGGAGTGATTCCACTCAACAGAAGTTTTGCCTTCAGCTTTAGGACTTGTGAAGGAGGCATCTTGCTCAGTCAGCAGGGCATAAACAATGGTTTCTTCGTTCTCGAAGTTGTCCCCACAATAGTAAATTATTCAGCGACACCTAGTCCTCTCTTTATACGTAGTCACCTTAAAATGAGCTGGGAAGTTAATGGAATTAGAGAGTTTGTTACATTAGGTTCAGACTTGGATAGGAATTTTATTTATGATGTGCGTTTTAGTCCTGGAAATGGGGCAATAAATTCAAGTCTTAGCCTTGGTCTACTTAGCGTGGAGGTATCAAATAGCATTTTATCATTTCTTAATTCTGGTCCTTTATTTGCTGGATCTCATTCTGATGGAGAAGGAGGGTTTGTTGGATGCATTGAAAGTGGGACGAATATTCCATTAAATGATACTGGTATTGGAGCTGTAGCTGTAAATGTTGTGAAGAACTGTTCACTTGATGTCCAGCTTGGATGTCCCCAGGAAGCCTGTCCCATTGGTTTCACTGGTGATTACTGTGAAATTAACATCAATGAGTGTGAGCAGCATCCCTGTCATGAGTACAGTACTTGTATGGATCTCATCGGCAACTACAGCTGCCACTGTGGACCACGCTGGACTGGTCAGCATTGCAACATCTTTTTGGGATCGTTATGTAACAGCACTGTCTGCAAAAATTCTGGTATCTGCCAAGATACAGTCGATAAAAACAACTACACTTGTGTCTGTCAGTCTGGCTTCACTGGGCGGAACTGTGAGCGTCAGTTTGACCCTTGTGATAGTTCTCCATGTGAACAAGGTGGAAATTGCTCGAAGCTTACAAGTGATGACTTTCAATGTGCTTGCCCACCAGGCTTTAGGGGAAAGAGATGCAATACTAACATTGATGAATGTGCATCATTTCCATGCAAGCAGAGGGGGTCTTGTATCGATGGCATCAATAATTTCACATGCAACTGTACTGGGTCCGGTTACACGGGACTTACATGTTCTGATGACATTAATGAATGTGAAACTAACAACCCCTGTCATCCTGAAGCAACTTGTTTCAACCGTCTTGGTACTTATCAGTGTGACTGCCAACCTGGATTTACTGGAAAGAACTGCTATGAAAATATTGATGACTGCCGAAGTAGTCCCTGCCAGAATGGAGggTCTTGCCATGACAAAGTGAGTGGTTATGCTTGTAACTGTACTGTGGGCTTCACTGGTGTCCATTGTGAGCAGAACATAGATGACTGTGTGTCAAACACTTGCAATAACTATTCATCTTGCCAGGATGGTGTCAATGATTATACTTGTGTTTGTAAACCAGGTTATACTGGAGTCAACTGTACCACTGAGATAAATGAATGTGAATCAAATCCTTGTCAAAATCTAGGAAACTGCACTCATGGTATAAACGTCTACAAATGCTCATGTCCAACTCGGTACACAGGACAAAACTGTGAGGTGGATTTAGTAGATGACTGCATTGACCATACCTGCCTCAATAGTGCAACCTGTGTGGATGGTGTGAATCAGTTCAACTGTACCTGCCTTCCTGGATATGAAGGGCTGAGATGTGAAAATGAGATAAATGAATGTCTGTCATTTCCGTGCCTTAACAATGGCACTTGTTTGGACAAGTTTAACAACTTCACATGCAACTGTACCACAGGGTTCATTGGGCATACCTGTGAAATCAACATCGACGACTGCCTCATTAATCCATGTCAAAACAATGCCACTTGTGTTGATGGCGTCAATCAACGTACATGTCACTGTCCTGCAGAATTCTATGGTGATGACTGCGACAAAGTGCGAGATGCTTGTCACCCAAATCCTTGTGGTGATAATGGAGATTGTTCGTTTATTGGCAATGCTTACAATTGTAGCTGTCGCTTAGGGTTTGAAGGCAAAAACTGTTCAGTCAATATAGATGATTGCAAAAACAACCCTTGTGTGGCAAATGCCTCATGCATTGACGGCGTGAATAACTTCACCTGTCAGTGTCCAGCTGGATTCTATGGAGACTTCTGTCACTTGGAAATCTATGAGTGTAACTCAAATCCTTGCCTAAATATGGGCACCTGCACTGATCTGATTGATGGCTATACCTGCTCTTGTGTCCTGGGGTTTACTGGCACCCACTGTGAAAACAATATTGATGACTGTCCGTCCCACGGATGCATGAATGGAACGTGCGTTGATGGAATCAACAGTTATACATGCAGTTGCGATTCAGGCTTCACTGGTCAATTGTGTGATCAGGACATAGATGAATGCACTTCCAAACCATGCAGATGTGGTTCCTGTGTCAATACTGTTGGATCATTTCGCTGCAACTGTAATCAGTGGTTGACAGGTGAACGCTGTGAGCAGGATATCAATGAATGTCTGAATGGAAGTTTCTGCAGTCAAACTATTGATCAAGGCATCTGCCAAAATGAGGATGCTTCAGTCATTGGCTGTGGACAAAAAGGATACACGTGCTTCTGTAGAAATGGCTTTCAAGGTCACCACTGTGAGATTGATACGGACGACTGTGCCAGTTTACCGTGCAAAAATGGCGGGACATGTCATGACTACCGGTTCTATTATAATTGCACTTGTGCATCGGGCTGGACTGGGAAAAATTGCGGTCAAGACATAGATGAGTGTGATCTTGGATTCTGCGAGAATAATGCGACGTGCAATAACTTGGATGGAACGTACTCATGCACATGTGCTCCTGGCTTTACAGACAGCAACTGTTCTACTGATATCGATGAATGCAAGCCCAATCCTTGTGTCAATGGGACCTGCACAGACTTGATAAATGGCTTCCATTGTATATGCGTTCCTGGATTTACAGGAAATAACTGCTCCGAAGACATAAATGAGTGTTCTTCTAGTCCTTGTGTAAACAACGGAACATGTAAAGATTTGATAGCTGATTTCAACTGTACTTGTCCTTCAAACTACACTGGCAAGAGATGCGAGATCGAGAAATCGTCCTGCGTACCCAACAACCCTTGTTTCAACAATGGCACCTGTAGGCTGCATTCAGAAAGATACAATTTTACGTGTGAGTGTGCCGCTGGCTTCGCAGGATCGCGCTGTCAGAACGTCACGACACTCGGGTTCAGTGACAGCTCATTGATGAAGCTCCAGGTCAACAGTAATACACCCGAGATGTCGTTTCAGTTTAGGACAACCCTAACTGACGTCCTGTTAGCTGTTGATTCAAAGAAcgatttccttgtttttcttggTAAGGAGAACATCACCGTAACACACAGTAATTTTGGCAAACTTTCTGCGGGGCAGACAGCAAACCTCAGCAACGGTCAATGGCATACAGTATCTGTTAACATAGGAACAGCAAACGTCAGCATTATGGTGGACAACTCGTCTTGTGGGCGACACTGCATGGCATCCTCTTCCCTCTCTGCGAGGGTTCACGTAACAGACCTCTATTTCGGTGGATCTCCGTTTGCTTCTAGCGTTGATCGAATCATGTCTAATTTTACTGGCTGCATTCAAGATGTAGTCATTGACGGCGGGACAGTGATCCCCACGGACCAGACACGGGTGGTGTTGGTTAACACAAGTATTGGGTGTCCACGCCAGGAAGTTTGTGCTTCCAGTCCTTGTGCCCACGGCAAGTGTGTGGATGAATGGGTCAAGTATAGCTGTGAGTGTTCAAGGCGATGGATTGGCCCACAATGCAATACAACTCTGATCCCAGGAGCGTTTGGGGCGACTGATCCGTTAAATGCGGCAAATAGCAGACAACGTCGTGATATCACAAACACGGGGAACGCCAGCTTTGCTAAATTCGTCACTAATGACACAAGTTTCGGCACCAGTGGAGAGTTGTCTTTCTTCATCCGAACGCGAGAATTGAGCGGGCTTGTTGTTCTCATGGCGGGTACTGACAAAAATCACATTGCTGTTGTCGTGCATGAAGGGACTTTGGTCGTTCAAGTCAACTTGAACGGCGTCAATTCAAATTTGACAATTGATGGAAGTCAAAATGTAACTGATGGTGAATGGCACTTCGTTGAAGTCCTCGGCAACCAGTTGCGCTTTGATAATGAAAGTCAGGTCGCGAGAATTACAGGAGGCGAAAGTATTAACTTGACCGTGACGTACCTCGGAGGACTCGACTCTTTTGACACCGATACTTATCTTATCAAATCTCCGTTTAGAGGCTGTTTGCAGGACATTCGGCTCAACGGCAAGATGTTCGATTTTGGTTTCAACAGTCCTTCGGCTTTCACCACCGAACGTTATCCGTTGGTCGATAGTGGTCATTTAGGGGAAGGCTGTAACGGGATGAACGTTTGTCGATCAGCGCCTTGTGGCAACGGAGGCTTCTGTCGCGACTTGTGGAACGCATACCAATGTGACTGTAAACCGCGCTATGGTGGGTTGCACTGTTCACGGTATGGCTGTTCCTTGGTTAACCTGTGCCCTGCCAATACGACATGCACAGACGTCGGGGAAAACTACGAGTGTGTCCATCCGACGACATTCAATGGTAGTTTAAGCAGTGCAGAATTCACCTTTGCTTCAAGTGTTAATGTGACTCTGAATATAACACTAAAATTGCGCACAAGGCAGCGAACAACGGTGTTAATTGAGATAAGGAAGGCTTCAGATGCATTCTTAAAAATGGAGCTCATCAACGGTCAAGTGAACGTCCATTTCTGTTTACACGGAGAAGCTGGTACTGTTTTTTCAGATGATTTTGTCAGCGATGGCAAGTGGCACAATGTCCTTTTCAACGTATCTGATGATCAGAGCTACCTGATTGTCGATGACGTCAGAACTGTTAATTCATCCGGACTTGCCGATGCTGACATAACAAGTTTGTTACAAAGCACACCAGTGAATGTTGGCCAACTTGCGTTCAAGGGATGCTTAAATGATGTTCGTATTGGAGGCTTGCTTCTGCCATTCGTCGATTACTACAACCATTCCTTGAACGTTAGTCATGCGACTCCCTTAAAACCCCACTTCAATGTCAGCACCAGAGGGTTGCAGCTTGGTTGTCATAGTGATGATGTTTGCGCCGCTAACCCCTGTGTACGCGGAGAATGTCATGATGTTTGGGACCTCTTCACTTGCGCATGCCCGGAAGGGTGGGCAGGAAATGTTTGTAATATGACAGCCAACATGACATGCGCGCACTCGCCGTGCGTGAATGGCACGTGCTATAACTTGACGTACGTGGACTTTGCAAGCAATCAGCGTCAAGTTAGTCAGGTGGGTTATGACATGTTCCAGTGCAACTGCACTCCGGGATTTGAAGGAAAGCGATGCGAGAATGACACGAAGGAATGCGAATCGAATCCGTGTCGAAATGGAGCCAACTGCACCGAATTACATCTCAACTATTCCTGCTCGTGTGTCAAGGGTTACACCGGTCGGGACTgtgaaacaaatattgacgagTGCGAGAACAACAACTGTACAAATAATTCCACTTGCAATGATGGTATCGATTCGTATAATTGTTCCTGTCAAAATGGATTCAATGGGACTTTCTGTGAGCTGGATGTCGATGAATGCGCTGCCTCGCTACCGTTTGGGCCTTGCAATGAAACCGGCACAGTCACTTGTGAGAATACTGTAGGGAACTTTGAATGCGTTTGTAAACGAGGGTACTTTGGCCGTTTCTGTGAGAACGACCCGTCAGTGACCTGCGAAAAATTATCACCGTGCAAGAATGGTGGAAATTGTTCTGATAATGCCACAGGCTTCATTTGCTCCTGCCCTGAGGGGTACAATGGCACGAAGTGCGAAAATGATATTCGTGAATGTAAAGATCAGCCGTGTATGAACAATGGTACATGTGTGGATCGCCATTCGAGTCCTTCATCTTTATTTTCCCCTGGTTACCATTGTGAATGCGCATTAGGATTTTACGGTCGAAACTGCGAGAATATTGCGGATTACTGTTCTCCAGATCCGTGCCAGAATAACGCAACCTGTGTGAACTTAAATACCCAAGGCAAATATTTCTGCAACTGCTCAGAGGAATTCGGCAATGTGAACTGCAGTGGACTTTCGGCAAACTGCAATCCTAATCCTTGCTTTCAAGGGACTTGTGTTCCTTTGATGGATGGTTACCAGTGTGAATGCGAACCGAGCTACAAAGGTGTGAACTGCAGTGTGCTCATTGACAAGTGTGACTCCAACCCTTGTCTCAATGGTGGTACATGCGAGACTTTGCCTGACGCGTTTAAATGTAATTGTGTGGAAGGCTGGGAAGGAATACTGTGTCAGTTAAAAAATCTCTGCTCGGATAAACCTTGCAAAAATAACGGGACTTGTGAATTCTTAGAACAGGGTGGGGATTTCAAATGTTTTTGCCGAGATGATTACACTGGAGAAACGTGTCAGACTTTACGCGAGCCAACCTCAGGCAAAGCTGAGACAGGGTTCTCAGCCATCGAGATTGGTGGGGCAGTATTAGCAGGTCTCATTGCCATTTTGTTCTTCGTTCTAATTGTTGTTGTGGTTAAGAAACGAGCTGGCAACGGAACCTACAGCCCCAGTAAAGAGGAAGGAGAAGCGGGACGAGTGGAACTGGACTCAATTCTCAAACCTCCTCCACTTGAAAGACTAATCTAA

Transcript

BRAKERNUST00000004394

Protein

BRAKERNUSP00000004394.1

MLSFFVVGFILLDYLQTAKSDKFFFNGTSSILVASGVIPLNRSFAFSFRTCEGGILLSQQGINNGFFVLEVVPTIVNYSATPSPLFIRSHLKMSWEVNGIREFVTLGSDLDRNFIYDVRFSPGNGAINSSLSLGLLSVEVSNSILSFLNSGPLFAGSHSDGEGGFVGCIESGTNIPLNDTGIGAVAVNVVKNCSLDVQLGCPQEACPIGFTGDYCEININECEQHPCHEYSTCMDLIGNYSCHCGPRWTGQHCNIFLGSLCNSTVCKNSGICQDTVDKNNYTCVCQSGFTGRNCERQFDPCDSSPCEQGGNCSKLTSDDFQCACPPGFRGKRCNTNIDECASFPCKQRGSCIDGINNFTCNCTGSGYTGLTCSDDINECETNNPCHPEATCFNRLGTYQCDCQPGFTGKNCYENIDDCRSSPCQNGGSCHDKVSGYACNCTVGFTGVHCEQNIDDCVSNTCNNYSSCQDGVNDYTCVCKPGYTGVNCTTEINECESNPCQNLGNCTHGINVYKCSCPTRYTGQNCEVDLVDDCIDHTCLNSATCVDGVNQFNCTCLPGYEGLRCENEINECLSFPCLNNGTCLDKFNNFTCNCTTGFIGHTCEINIDDCLINPCQNNATCVDGVNQRTCHCPAEFYGDDCDKVRDACHPNPCGDNGDCSFIGNAYNCSCRLGFEGKNCSVNIDDCKNNPCVANASCIDGVNNFTCQCPAGFYGDFCHLEIYECNSNPCLNMGTCTDLIDGYTCSCVLGFTGTHCENNIDDCPSHGCMNGTCVDGINSYTCSCDSGFTGQLCDQDIDECTSKPCRCGSCVNTVGSFRCNCNQWLTGERCEQDINECLNGSFCSQTIDQGICQNEDASVIGCGQKGYTCFCRNGFQGHHCEIDTDDCASLPCKNGGTCHDYRFYYNCTCASGWTGKNCGQDIDECDLGFCENNATCNNLDGTYSCTCAPGFTDSNCSTDIDECKPNPCVNGTCTDLINGFHCICVPGFTGNNCSEDINECSSSPCVNNGTCKDLIADFNCTCPSNYTGKRCEIEKSSCVPNNPCFNNGTCRLHSERYNFTCECAAGFAGSRCQNVTTLGFSDSSLMKLQVNSNTPEMSFQFRTTLTDVLLAVDSKNDFLVFLGKENITVTHSNFGKLSAGQTANLSNGQWHTVSVNIGTANVSIMVDNSSCGRHCMASSSLSARVHVTDLYFGGSPFASSVDRIMSNFTGCIQDVVIDGGTVIPTDQTRVVLVNTSIGCPRQEVCASSPCAHGKCVDEWVKYSCECSRRWIGPQCNTTLIPGAFGATDPLNAANSRQRRDITNTGNASFAKFVTNDTSFGTSGELSFFIRTRELSGLVVLMAGTDKNHIAVVVHEGTLVVQVNLNGVNSNLTIDGSQNVTDGEWHFVEVLGNQLRFDNESQVARITGGESINLTVTYLGGLDSFDTDTYLIKSPFRGCLQDIRLNGKMFDFGFNSPSAFTTERYPLVDSGHLGEGCNGMNVCRSAPCGNGGFCRDLWNAYQCDCKPRYGGLHCSRYGCSLVNLCPANTTCTDVGENYECVHPTTFNGSLSSAEFTFASSVNVTLNITLKLRTRQRTTVLIEIRKASDAFLKMELINGQVNVHFCLHGEAGTVFSDDFVSDGKWHNVLFNVSDDQSYLIVDDVRTVNSSGLADADITSLLQSTPVNVGQLAFKGCLNDVRIGGLLLPFVDYYNHSLNVSHATPLKPHFNVSTRGLQLGCHSDDVCAANPCVRGECHDVWDLFTCACPEGWAGNVCNMTANMTCAHSPCVNGTCYNLTYVDFASNQRQVSQVGYDMFQCNCTPGFEGKRCENDTKECESNPCRNGANCTELHLNYSCSCVKGYTGRDCETNIDECENNNCTNNSTCNDGIDSYNCSCQNGFNGTFCELDVDECAASLPFGPCNETGTVTCENTVGNFECVCKRGYFGRFCENDPSVTCEKLSPCKNGGNCSDNATGFICSCPEGYNGTKCENDIRECKDQPCMNNGTCVDRHSSPSSLFSPGYHCECALGFYGRNCENIADYCSPDPCQNNATCVNLNTQGKYFCNCSEEFGNVNCSGLSANCNPNPCFQGTCVPLMDGYQCECEPSYKGVNCSVLIDKCDSNPCLNGGTCETLPDAFKCNCVEGWEGILCQLKNLCSDKPCKNNGTCEFLEQGGDFKCFCRDDYTGETCQTLREPTSGKAETGFSAIEIGGAVLAGLIAILFFVLIVVVVKKRAGNGTYSPSKEEGEAGRVELDSILKPPPLERLI

Uniprot

Uniprot term	Description
Q5IJ48	Protein crumbs homolog 2 OS=Homo sapiens OX=9606 GN=CRB2 PE=1 SV=2
P14585	Protein lin-12 OS=Caenorhabditis elegans OX=6239 GN=lin-12 PE=1 SV=1
Q80YA8	Protein crumbs homolog 2 OS=Mus musculus OX=10090 GN=Crb2 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12661	hEGF	Human growth factor-like EGF	Domain	Interproscan
PF02210	Laminin_G_2	Laminin G domain	Domain	Interproscan
PF00008	EGF	EGF-like domain	Domain	Interproscan
PF07645	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001791	Domain	Laminin G domain	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR013032	Conserved_site	EGF-like, conserved site	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR049883	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12916	CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K16681	CRB; protein crumbs	-	Hippo signaling pathway - fly	ko04391	deepkoala