Gene detail

Detailed information of BRAKERNUSP00000004435.1 in Montipora cactus

Genomic Location: :...
NR annotation: XP_029200678.2, vesicular inhibitory amino acid transporter-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERNUST00000004435

ATGGAGAGAGCAAAGCAGAAAGGCGTGGTATTcaacaaagacaaagtgcagttcaagtgtaataAAGTCAGCTTCTTTGGACATACCTGGACGCCACAGGGAGTCAAACCTGACAACAAGAAAGTATCAGCAATCATAGACATGAAACCGCCTGAGGATGTCAAGAGCCTACAGAGTTTTCTTGGCTTAGTCAACTATCTGACGAGATATTCCGGACGCCTGGCTACGCTATCAGCACCACTAAGGGACCTGACCAAGAAAGACACAGAGTACTCCTGGAGACCTGAGCACGACCGAGCCTTCACCGAGGTCAAGAAGGAAGTCTCATCACTTGACGTACTTAGGTACTTCGACCCGCATGCAGAAACTGTCATGCAAACTGACGCCTCGCTGAAAGGATTAGGCGCTGTATTACTGCAAGACGGAAAGCCTGTATGTTATGCCTCAAAAGCCCTAACCGAGACCGAACAGCGATACAGTAACATTGAACGTGAGGTATTCGGCGTCATCTGGGAACTTGAAAGGTTCCATTACTTCATCTACGGCAAGTCCTGCACTATCCACACAGATCACAAGCCGCTGGAGGCGATCTTCAAGAAGAAACTAAGTAACTGCCCTCCAAGATTACAGAGGGGCAGTCACTATGAAACAGCGAAAGAAGAAAGCCACAAACTAAATATATTGGACAGGAAAAAGCCCCAGGAGTCAACGGAAGCAACGCCTTTAACAGtttcccatctgaccttgtccCTTATTGAGAAGGAGAGTTTAGACAGACAAGCTTCAGCTATCTTGGCTGGCTGGAATGTGACCAACATGATACAAGGGATGGGCATCCTTGGTGTTCCGTATGCAGTTAGGGAGGGAGGGGTGGCTGCGGTTGTCTGTATCTTTATTGTGGCTATGTTCTGTGATTTTACTGGAATATTACTGGTCGACTGCTTGTATGAAATCTCACCTCGTAGCAAGATGAGGAAAAGAGTGCGTGAGTCATACCCTGATGTTGGTGATGCGGTCTGGCCTGGAGTGGGCGGGAAAGTCGTTGGTATTGTGCAGACAATAGAACTCTACTCAGCTGCAGTGCTGTATCTGATCCTGCTCACTTCAATGTTATCTCAGATCACAGCAAAGTATGTGCCAATTGGTCTAAATGAATGGGCAATCATCTGTTCCTTGGCTGTTCTTCCAAGTGTCTTCATTCAAAGACTCTCTCGTATTGCATGGATGAGCATGGTGGCTGTATTTTCACTCATGTCAGCACTCATGGTCATGATATCGTATTGCATTGTTCTTAGTGATGAGTGGACATGGGATAATATTCCCTCGTTCAACATTAGTACATTTCCTGTTGGATTTGGTATAGTTGCATTTAGTTACTGTGCCCATGCTGTTTTTCCAGGCGTTGAAGGGAGCATGAGAGAACCCAAACACTTCAATAACATGATGcatgtttcattttttatctctGCAGTTGTTAAAACGCTGTTCGGCATCTTTTCTGTGCTCACATTTGGACACCTCACTAAACAAGTCTTTACTCTCAACTTGGAAGGAAATGTCGTATTTAACACAGCAGCAACAGTCTTGGTGGCAATTAATGTGTTTTTCTCCTTTCCTGTCCCTCTATTTGTCGTGGTGGAAACATTTGACAACATTATTGGCCCTCACTTTCCTCATTTAGCACCAGGAACAAAATATCATTGGTACTGGCTGCTGTTGACAAGAACATTACTGGTGACCTTGGCATTATTCATTGCTCTTGTTGTGCCACATTTCGGCCTGCTAATGGGATTTGTGGGCAGTTTTACTGGAACATGTTTGTCATTTGGATTTCCTTGTATAGCTCATCTCATGCTGCGTTGGAATTCTCTCCGCTGGTATCATATCACTGGGGAAATTGTCCTTATTGTTTTTGGAGTTTTTGCTGGAGGGCTCAGCTTTGTTTATTCTGGAAAAGCTCTTCTGGATTCCTTTCACACATTCAAGTAA

Transcript

BRAKERNUST00000004435

Protein

Uniprot

Uniprot term	Description
Q6DIV6	Vesicular inhibitory amino acid transporter OS=Xenopus tropicalis OX=8364 GN=slc32a1 PE=2 SV=1
Q9H598	Vesicular inhibitory amino acid transporter OS=Homo sapiens OX=9606 GN=SLC32A1 PE=1 SV=2
Q95KE2	Vesicular inhibitory amino acid transporter OS=Macaca fascicularis OX=9541 GN=SLC32A1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01490	Aa_trans	Transmembrane amino acid transporter protein	Family	Interproscan
PF17919	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013057	Domain	Amino acid transporter, transmembrane domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR041577	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
-	-	-	-

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15015	SLC32A, VGAT; solute carrier family 32 (vesicular inhibitory amino acid transporter)	-	Transporters	ko02000	deepkoala